- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 7 x CL: CHLORIDE ION(Non-functional Binders)
- 9 x K: POTASSIUM ION(Non-covalent)
K.6: 3 residues within 4Å:- Chain A: D.84, G.112, T.114
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.84, A:G.112, A:T.114, H2O.25
K.7: 6 residues within 4Å:- Chain A: E.217, T.244, N.283, Q.285
- Ligands: MN.11, PO4.17
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:E.217
K.8: 1 residues within 4Å:- Chain A: T.279
No protein-ligand interaction detected (PLIP)K.9: 2 residues within 4Å:- Chain A: T.143, A.144
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:T.143, A:A.144
K.12: 6 residues within 4Å:- Chain A: E.215, N.236, D.238, A.239, I.242, S.247
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.215, A:D.238, A:A.239, A:I.242, A:S.247
K.13: 6 residues within 4Å:- Chain A: A.126, E.127, E.299, M.300, N.301
- Ligands: MN.10
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.127, A:E.299, A:M.300, H2O.7, H2O.25
K.15: 3 residues within 4Å:- Chain A: E.841, N.843
- Ligands: ADP.20
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:E.841
K.16: 6 residues within 4Å:- Chain A: E.761, H.781, E.783, Q.784, V.787, S.792
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.761, A:H.781, A:Q.784, A:V.787, A:S.792
K.25: 2 residues within 4Å:- Chain B: H.16, D.112
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.16, B:D.112, H2O.17, H2O.35
- 3 x MN: MANGANESE (II) ION(Non-covalent)
MN.10: 7 residues within 4Å:- Chain A: M.174, E.299, N.301
- Ligands: MN.11, K.13, PO4.17, ADP.19
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.299, A:E.299, H2O.3
MN.11: 7 residues within 4Å:- Chain A: H.243, Q.285, E.299
- Ligands: K.7, MN.10, PO4.17, ADP.19
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.299, H2O.3
MN.14: 3 residues within 4Å:- Chain A: Q.829, E.841
- Ligands: ADP.20
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.841, H2O.3
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.17: 12 residues within 4Å:- Chain A: M.174, G.175, H.243, Q.285, E.299, N.301, R.303, R.306
- Ligands: K.7, MN.10, MN.11, ADP.19
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:G.175, A:E.299, A:N.301
- Water bridges: A:Q.285, A:R.303, A:S.305, A:R.306
- Salt bridges: A:H.243, A:R.303, A:R.306
PO4.18: 5 residues within 4Å:- Chain A: P.797, P.885, P.886, Y.887, Y.888
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.885
- Water bridges: A:Y.888
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.19: 25 residues within 4Å:- Chain A: R.129, I.167, R.169, T.173, M.174, G.175, G.176, D.207, E.208, S.209, L.210, I.211, E.215, M.240, G.241, I.242, H.243, T.244, Q.285, I.298, E.299, T.376
- Ligands: MN.10, MN.11, PO4.17
20 PLIP interactions:20 interactions with chain A- Hydrogen bonds: A:T.173, A:T.173, A:G.175, A:G.176, A:E.208, A:L.210, A:E.215, A:G.241, A:T.244, A:Q.285, A:E.299, A:E.299
- Water bridges: A:R.129, A:R.129, A:H.243, A:Q.285
- Salt bridges: A:R.129, A:R.129, A:R.169, A:H.243
ADP.20: 19 residues within 4Å:- Chain A: P.690, V.713, R.715, M.725, H.754, F.755, L.756, E.761, A.785, G.786, V.787, H.788, S.789, Q.829, I.840, E.841, P.909
- Ligands: MN.14, K.15
12 PLIP interactions:12 interactions with chain A- Hydrogen bonds: A:R.715, A:R.715, A:H.754, A:L.756, A:E.761, A:G.786, A:S.789, A:S.789, A:E.841
- Water bridges: A:Q.829
- Salt bridges: A:R.715, A:H.788
- 1 x ORN: L-ornithine(Non-covalent)
- 1 x NET: TETRAETHYLAMMONIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., The small subunit of carbamoyl phosphate synthetase: snapshots along the reaction pathway. Biochemistry (1999)
- Release Date
- 1999-12-10
- Peptides
- CARBAMOYL PHOSPHATE SYNTHETASE: LARGE SUBUNIT: A
CARBAMOYL PHOSPHATE SYNTHETASE: SMALL SUBUNIT: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 7 x CL: CHLORIDE ION(Non-functional Binders)
- 9 x K: POTASSIUM ION(Non-covalent)
- 3 x MN: MANGANESE (II) ION(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 1 x ORN: L-ornithine(Non-covalent)
- 1 x NET: TETRAETHYLAMMONIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., The small subunit of carbamoyl phosphate synthetase: snapshots along the reaction pathway. Biochemistry (1999)
- Release Date
- 1999-12-10
- Peptides
- CARBAMOYL PHOSPHATE SYNTHETASE: LARGE SUBUNIT: A
CARBAMOYL PHOSPHATE SYNTHETASE: SMALL SUBUNIT: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
F