- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 16 x MN: MANGANESE (II) ION(Non-covalent)
- 29 x K: POTASSIUM ION(Non-covalent)
K.3: 6 residues within 4Å:- Chain A: E.215, N.236, D.238, A.239, I.242, S.247
Ligand excluded by PLIPK.4: 6 residues within 4Å:- Chain A: A.126, E.127, E.299, M.300, N.301
- Ligands: MN.1
Ligand excluded by PLIPK.5: 6 residues within 4Å:- Chain A: E.217, T.244, N.283, Q.285
- Ligands: MN.2, PO4.6
Ligand excluded by PLIPK.9: 6 residues within 4Å:- Chain A: E.761, H.781, E.783, Q.784, V.787, S.792
Ligand excluded by PLIPK.11: 2 residues within 4Å:- Chain A: T.143, A.144
Ligand excluded by PLIPK.12: 3 residues within 4Å:- Chain A: D.84, G.112, T.114
Ligand excluded by PLIPK.25: 2 residues within 4Å:- Chain B: H.16, D.112
Ligand excluded by PLIPK.29: 6 residues within 4Å:- Chain C: E.215, N.236, D.238, A.239, I.242, S.247
Ligand excluded by PLIPK.30: 6 residues within 4Å:- Chain C: A.126, E.127, E.299, M.300, N.301
- Ligands: MN.27
Ligand excluded by PLIPK.31: 6 residues within 4Å:- Chain C: E.217, T.244, N.283, Q.285
- Ligands: MN.28, PO4.32
Ligand excluded by PLIPK.35: 6 residues within 4Å:- Chain C: E.761, H.781, E.783, Q.784, V.787, S.792
Ligand excluded by PLIPK.37: 3 residues within 4Å:- Chain C: T.143, A.144, R.145
Ligand excluded by PLIPK.38: 3 residues within 4Å:- Chain C: D.84, G.112, T.114
Ligand excluded by PLIPK.39: 5 residues within 4Å:- Chain C: A.672, E.673, E.841, V.842, N.843
Ligand excluded by PLIPK.53: 2 residues within 4Å:- Chain D: H.16, D.112
Ligand excluded by PLIPK.57: 6 residues within 4Å:- Chain E: E.215, N.236, D.238, A.239, I.242, S.247
Ligand excluded by PLIPK.58: 6 residues within 4Å:- Chain E: A.126, E.127, E.299, M.300, N.301
- Ligands: MN.55
Ligand excluded by PLIPK.59: 7 residues within 4Å:- Chain E: E.217, T.244, N.283, Q.285, N.301
- Ligands: MN.56, PO4.60
Ligand excluded by PLIPK.63: 6 residues within 4Å:- Chain E: E.761, H.781, E.783, Q.784, V.787, S.792
Ligand excluded by PLIPK.65: 3 residues within 4Å:- Chain E: T.143, A.144, R.145
Ligand excluded by PLIPK.78: 2 residues within 4Å:- Chain F: H.16, D.112
Ligand excluded by PLIPK.82: 6 residues within 4Å:- Chain G: E.215, N.236, D.238, A.239, I.242, S.247
Ligand excluded by PLIPK.83: 6 residues within 4Å:- Chain G: A.126, E.127, E.299, M.300, N.301
- Ligands: MN.80
Ligand excluded by PLIPK.84: 6 residues within 4Å:- Chain G: E.217, T.244, N.283, Q.285
- Ligands: MN.81, PO4.85
Ligand excluded by PLIPK.88: 6 residues within 4Å:- Chain G: E.761, H.781, E.783, Q.784, V.787, S.792
Ligand excluded by PLIPK.90: 2 residues within 4Å:- Chain G: T.143, A.144
Ligand excluded by PLIPK.91: 5 residues within 4Å:- Chain G: A.672, E.673, E.841, V.842, N.843
Ligand excluded by PLIPK.92: 2 residues within 4Å:- Chain G: C.551, N.554
Ligand excluded by PLIPK.106: 2 residues within 4Å:- Chain H: H.16, D.112
Ligand excluded by PLIP- 9 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.6: 12 residues within 4Å:- Chain A: M.174, G.175, H.243, Q.285, E.299, N.301, R.303, R.306
- Ligands: MN.1, MN.2, K.5, ADP.21
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:G.175, A:N.301
- Water bridges: A:R.303, A:S.305, A:R.306
- Salt bridges: A:H.243, A:R.303, A:R.306
PO4.10: 8 residues within 4Å:- Chain A: S.948, V.949, K.954, T.974, G.976, T.977, K.993
- Ligands: GLN.19
8 PLIP interactions:7 interactions with chain A, 1 Ligand-Ligand interactions- Hydrogen bonds: A:S.948, A:T.974, A:T.974, A:G.976, A:T.977, Q.19
- Salt bridges: A:K.954, A:K.993
PO4.32: 12 residues within 4Å:- Chain C: M.174, G.175, H.243, Q.285, E.299, N.301, R.303, R.306
- Ligands: MN.27, MN.28, K.31, ADP.49
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:G.175, C:N.301, C:N.301
- Water bridges: C:Q.285, C:R.303, C:S.305
- Salt bridges: C:H.243, C:R.303, C:R.306
PO4.36: 9 residues within 4Å:- Chain C: S.948, V.949, K.954, T.974, H.975, G.976, T.977, K.993
- Ligands: GLN.47
15 PLIP interactions:14 interactions with chain C, 1 Ligand-Ligand interactions- Hydrogen bonds: C:T.974, C:T.974, C:T.974, C:G.976, C:T.977, C:T.977, Q.47
- Water bridges: C:K.954, C:K.954, C:K.993, C:K.993, C:K.993, C:K.993
- Salt bridges: C:K.954, C:K.993
PO4.60: 12 residues within 4Å:- Chain E: M.174, G.175, H.243, Q.285, E.299, N.301, R.303, R.306
- Ligands: MN.55, MN.56, K.59, ADP.74
7 PLIP interactions:7 interactions with chain E- Hydrogen bonds: E:G.175, E:N.301
- Water bridges: E:R.303, E:S.305
- Salt bridges: E:H.243, E:R.303, E:R.306
PO4.64: 8 residues within 4Å:- Chain E: S.948, V.949, K.954, T.974, G.976, T.977, K.993
- Ligands: GLN.72
7 PLIP interactions:7 interactions with chain E- Hydrogen bonds: E:T.974, E:T.974, E:T.974, E:G.976, E:T.977
- Salt bridges: E:K.954, E:K.993
PO4.85: 12 residues within 4Å:- Chain G: M.174, G.175, H.243, Q.285, E.299, N.301, R.303, R.306
- Ligands: MN.80, MN.81, K.84, ADP.102
9 PLIP interactions:9 interactions with chain G- Hydrogen bonds: G:G.175, G:N.301, G:N.301
- Water bridges: G:Q.285, G:R.303, G:S.305
- Salt bridges: G:H.243, G:R.303, G:R.306
PO4.89: 9 residues within 4Å:- Chain G: S.948, V.949, K.954, T.974, H.975, G.976, T.977, K.993
- Ligands: GLN.100
11 PLIP interactions:11 interactions with chain G- Hydrogen bonds: G:T.974, G:T.974, G:T.974, G:G.976, G:T.977, G:T.977
- Water bridges: G:K.954, G:K.954, G:K.993
- Salt bridges: G:K.954, G:K.993
PO4.99: 3 residues within 4Å:- Chain G: E.560, D.592, Y.594
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:G.593
- Water bridges: G:Y.594
- 29 x CL: CHLORIDE ION(Non-functional Binders)
CL.13: 3 residues within 4Å:- Chain A: N.289, N.292, R.294
Ligand excluded by PLIPCL.14: 5 residues within 4Å:- Chain A: A.370, N.371, F.900, P.901, G.902
Ligand excluded by PLIPCL.15: 5 residues within 4Å:- Chain A: Q.93, T.173, M.174, S.177
- Ligands: NET.24
Ligand excluded by PLIPCL.16: 2 residues within 4Å:- Chain A: H.70, W.71
Ligand excluded by PLIPCL.17: 3 residues within 4Å:- Chain A: K.475, N.485, F.488
Ligand excluded by PLIPCL.18: 4 residues within 4Å:- Chain A: F.578, R.845, A.847, R.848
Ligand excluded by PLIPCL.26: 4 residues within 4Å:- Chain A: E.549
- Chain B: F.15, I.113, D.114
Ligand excluded by PLIPCL.40: 4 residues within 4Å:- Chain C: W.213, N.289, N.292, R.294
Ligand excluded by PLIPCL.41: 5 residues within 4Å:- Chain C: A.370, N.371, F.900, P.901, G.902
Ligand excluded by PLIPCL.42: 4 residues within 4Å:- Chain C: Q.93, T.173, M.174
- Ligands: NET.52
Ligand excluded by PLIPCL.43: 2 residues within 4Å:- Chain C: H.70, W.71
Ligand excluded by PLIPCL.44: 3 residues within 4Å:- Chain C: K.475, N.485, F.488
Ligand excluded by PLIPCL.45: 3 residues within 4Å:- Chain C: M.115, T.119, A.120
Ligand excluded by PLIPCL.46: 4 residues within 4Å:- Chain C: F.578, R.845, A.847, R.848
Ligand excluded by PLIPCL.54: 4 residues within 4Å:- Chain C: E.549
- Chain D: F.15, I.113, D.114
Ligand excluded by PLIPCL.66: 4 residues within 4Å:- Chain E: W.213, N.289, N.292, R.294
Ligand excluded by PLIPCL.67: 5 residues within 4Å:- Chain E: A.370, N.371, F.900, P.901, G.902
Ligand excluded by PLIPCL.68: 5 residues within 4Å:- Chain E: Q.93, T.173, M.174, S.177
- Ligands: NET.77
Ligand excluded by PLIPCL.69: 2 residues within 4Å:- Chain E: H.70, W.71
Ligand excluded by PLIPCL.70: 3 residues within 4Å:- Chain E: K.475, N.485, F.488
Ligand excluded by PLIPCL.71: 4 residues within 4Å:- Chain E: F.578, R.845, A.847, R.848
Ligand excluded by PLIPCL.79: 4 residues within 4Å:- Chain E: E.549
- Chain F: F.15, I.113, D.114
Ligand excluded by PLIPCL.93: 3 residues within 4Å:- Chain G: N.289, N.292, R.294
Ligand excluded by PLIPCL.94: 5 residues within 4Å:- Chain G: A.370, N.371, F.900, P.901, G.902
Ligand excluded by PLIPCL.95: 5 residues within 4Å:- Chain G: Q.93, T.173, M.174, S.177
- Ligands: NET.105
Ligand excluded by PLIPCL.96: 1 residues within 4Å:- Chain G: W.71
Ligand excluded by PLIPCL.97: 3 residues within 4Å:- Chain G: K.475, N.485, F.488
Ligand excluded by PLIPCL.98: 4 residues within 4Å:- Chain G: F.578, R.845, A.847, R.848
Ligand excluded by PLIPCL.107: 3 residues within 4Å:- Chain H: F.15, I.113, D.114
Ligand excluded by PLIP- 8 x GLN: GLUTAMINE(Non-covalent)
GLN.19: 10 residues within 4Å:- Chain A: V.949, K.993, H.995, N.1015, T.1016, T.1017, D.1025, S.1026, I.1029
- Ligands: PO4.10
6 PLIP interactions:6 interactions with chain A,- Hydrogen bonds: A:N.1015, A:T.1016, A:S.1026
- Water bridges: A:V.994, A:S.1018
- Salt bridges: A:H.995
GLN.20: 8 residues within 4Å:- Chain A: R.528, A.537, T.538, D.539, E.552, N.554
- Chain B: R.120, R.123
11 PLIP interactions:6 interactions with chain A, 5 interactions with chain B,- Hydrogen bonds: A:T.538, A:D.539, A:E.552, A:N.554
- Water bridges: A:R.528, A:D.539, B:R.120, B:R.123, B:R.123
- Salt bridges: B:R.120, B:R.123
GLN.47: 11 residues within 4Å:- Chain C: S.948, V.949, R.950, K.993, N.1015, T.1016, T.1017, D.1025, S.1026, I.1029
- Ligands: PO4.36
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Ligand interactions- Hydrogen bonds: C:S.948, C:S.948, C:N.1015, C:T.1016, Q.47
GLN.48: 7 residues within 4Å:- Chain C: R.528, A.537, T.538, E.552, N.554
- Chain D: R.120, R.123
12 PLIP interactions:5 interactions with chain D, 1 Ligand-Ligand interactions, 6 interactions with chain C- Water bridges: D:R.120, D:R.123, D:R.123, Q.48, C:R.528, C:T.538, C:E.552
- Salt bridges: D:R.120, D:R.123
- Hydrogen bonds: C:T.538, C:E.552, C:N.554
GLN.72: 11 residues within 4Å:- Chain E: S.948, V.949, R.950, K.993, N.1015, T.1016, T.1017, D.1025, S.1026, I.1029
- Ligands: PO4.64
6 PLIP interactions:5 interactions with chain E, 1 Ligand-Ligand interactions- Hydrogen bonds: E:S.948, E:S.948, E:N.1015, E:T.1016, Q.72
- Water bridges: E:V.994
GLN.73: 7 residues within 4Å:- Chain E: R.528, A.537, T.538, E.552, N.554
- Chain F: R.120, R.123
9 PLIP interactions:5 interactions with chain E, 4 interactions with chain F- Hydrogen bonds: E:T.538, E:E.552, E:N.554
- Water bridges: E:D.539, E:E.552, F:R.120, F:R.123
- Salt bridges: F:R.120, F:R.123
GLN.100: 11 residues within 4Å:- Chain G: S.948, V.949, R.950, K.993, N.1015, T.1016, T.1017, D.1025, S.1026, I.1029
- Ligands: PO4.89
7 PLIP interactions:6 interactions with chain G, 1 Ligand-Ligand interactions- Hydrogen bonds: G:S.948, G:S.948, G:N.1015, G:T.1016, Q.100
- Water bridges: G:K.993, G:V.994
GLN.101: 8 residues within 4Å:- Chain G: R.528, A.537, T.538, D.539, E.552, N.554
- Chain H: R.120, R.123
12 PLIP interactions:5 interactions with chain G, 6 interactions with chain H, 1 Ligand-Ligand interactions- Hydrogen bonds: G:T.538, G:D.539, G:E.552, G:N.554
- Water bridges: G:D.539, H:R.120, H:R.120, H:R.123, H:R.123, Q.101
- Salt bridges: H:R.120, H:R.123
- 8 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.21: 25 residues within 4Å:- Chain A: R.129, I.167, R.169, T.173, M.174, G.175, G.176, D.207, E.208, S.209, L.210, I.211, E.215, M.240, G.241, I.242, H.243, T.244, Q.285, I.298, E.299, T.376
- Ligands: MN.1, MN.2, PO4.6
17 PLIP interactions:17 interactions with chain A- Hydrogen bonds: A:G.175, A:G.176, A:E.208, A:L.210, A:E.215, A:G.241, A:I.242, A:T.244, A:E.299
- Water bridges: A:T.173, A:T.173, A:H.243, A:H.243
- Salt bridges: A:R.129, A:R.129, A:R.169, A:H.243
ADP.22: 19 residues within 4Å:- Chain A: P.690, V.713, R.715, M.725, H.754, F.755, L.756, E.761, A.785, G.786, V.787, H.788, S.789, Q.829, I.840, E.841, P.909
- Ligands: MN.7, MN.8
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:H.754, A:L.756, A:E.761, A:G.786, A:S.789, A:S.789
- Water bridges: A:S.789
- Salt bridges: A:R.715, A:H.788
ADP.49: 25 residues within 4Å:- Chain C: R.129, I.167, R.169, T.173, M.174, G.175, G.176, D.207, E.208, S.209, L.210, I.211, E.215, M.240, G.241, I.242, H.243, T.244, Q.285, I.298, E.299, T.376
- Ligands: MN.27, MN.28, PO4.32
18 PLIP interactions:18 interactions with chain C- Hydrogen bonds: C:T.173, C:G.175, C:G.176, C:E.208, C:L.210, C:E.215, C:G.241, C:I.242, C:T.244, C:Q.285, C:E.299
- Water bridges: C:R.129, C:R.129, C:H.243
- Salt bridges: C:R.129, C:R.129, C:R.169, C:H.243
ADP.50: 19 residues within 4Å:- Chain C: P.690, V.713, R.715, M.725, H.754, F.755, L.756, E.761, A.785, G.786, V.787, H.788, S.789, Q.829, I.840, E.841, P.909
- Ligands: MN.33, MN.34
15 PLIP interactions:15 interactions with chain C- Hydrogen bonds: C:R.715, C:R.715, C:H.754, C:L.756, C:E.761, C:G.786, C:S.789
- Water bridges: C:Q.829, C:Q.829, C:E.841, C:N.843, C:N.843, C:R.848
- Salt bridges: C:R.715, C:H.788
ADP.74: 25 residues within 4Å:- Chain E: R.129, I.167, R.169, T.173, M.174, G.175, G.176, D.207, E.208, S.209, L.210, I.211, E.215, M.240, G.241, I.242, H.243, T.244, Q.285, I.298, E.299, T.376
- Ligands: MN.55, MN.56, PO4.60
20 PLIP interactions:20 interactions with chain E- Hydrogen bonds: E:T.173, E:M.174, E:G.175, E:G.176, E:E.208, E:L.210, E:E.215, E:G.241, E:I.242, E:T.244, E:Q.285, E:E.299
- Water bridges: E:R.129, E:R.129, E:H.243, E:Q.285
- Salt bridges: E:R.129, E:R.129, E:R.169, E:H.243
ADP.75: 18 residues within 4Å:- Chain E: P.690, R.715, M.725, H.754, F.755, L.756, E.761, A.785, G.786, V.787, H.788, S.789, Q.829, I.840, E.841, P.909
- Ligands: MN.61, MN.62
16 PLIP interactions:16 interactions with chain E- Hydrogen bonds: E:R.715, E:H.754, E:L.756, E:E.761, E:G.786, E:S.789, E:Q.829, E:E.841
- Water bridges: E:H.788, E:Q.829, E:E.841, E:E.841, E:N.843, E:N.843
- Salt bridges: E:R.715, E:H.788
ADP.102: 25 residues within 4Å:- Chain G: R.129, I.167, R.169, T.173, M.174, G.175, G.176, D.207, E.208, S.209, L.210, I.211, E.215, M.240, G.241, I.242, H.243, T.244, Q.285, I.298, E.299, T.376
- Ligands: MN.80, MN.81, PO4.85
20 PLIP interactions:20 interactions with chain G- Hydrogen bonds: G:T.173, G:M.174, G:G.175, G:G.176, G:E.208, G:L.210, G:E.215, G:G.241, G:I.242, G:T.244, G:Q.285, G:E.299
- Water bridges: G:R.129, G:R.129, G:H.243, G:Q.285
- Salt bridges: G:R.129, G:R.129, G:R.169, G:H.243
ADP.103: 17 residues within 4Å:- Chain G: P.690, R.715, H.754, F.755, L.756, E.761, A.785, G.786, V.787, H.788, S.789, Q.829, I.840, E.841, P.909
- Ligands: MN.86, MN.87
13 PLIP interactions:13 interactions with chain G- Hydrogen bonds: G:R.715, G:R.715, G:H.754, G:L.756, G:E.761, G:G.786, G:S.789, G:S.789, G:E.841
- Water bridges: G:Q.829, G:N.843
- Salt bridges: G:R.715, G:H.788
- 4 x ORN: L-ornithine(Non-covalent)
ORN.23: 10 residues within 4Å:- Chain A: E.783, D.791, A.793, E.892, V.893, L.895, L.907, Y.1040, D.1041, T.1042
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.895
- Hydrogen bonds: A:D.791, A:A.793, A:D.1041, A:T.1042
- Water bridges: A:E.783
ORN.51: 10 residues within 4Å:- Chain C: E.783, D.791, S.792, A.793, E.892, V.893, L.907, Y.1040, D.1041, T.1042
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:L.907
- Hydrogen bonds: C:D.791, C:D.1041, C:D.1041, C:T.1042
- Water bridges: C:T.1043
ORN.76: 9 residues within 4Å:- Chain E: E.783, D.791, A.793, E.892, V.893, L.907, Y.1040, D.1041, T.1042
9 PLIP interactions:9 interactions with chain E- Hydrophobic interactions: E:L.907
- Hydrogen bonds: E:A.793, E:E.892, E:D.1041, E:T.1042
- Water bridges: E:E.783, E:E.783, E:E.783, E:Y.1040
ORN.104: 9 residues within 4Å:- Chain G: E.783, D.791, A.793, E.892, L.895, L.907, Y.1040, D.1041, T.1042
10 PLIP interactions:10 interactions with chain G- Hydrophobic interactions: G:L.895, G:L.907
- Hydrogen bonds: G:D.791, G:A.793, G:D.1041, G:D.1041, G:T.1042
- Water bridges: G:E.783, G:P.905, G:Y.1040
- 4 x NET: TETRAETHYLAMMONIUM ION(Non-covalent)
NET.24: 7 residues within 4Å:- Chain A: V.19, Q.22, Q.93, T.94, N.97, N.936
- Ligands: CL.15
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.19, A:Q.93
NET.52: 6 residues within 4Å:- Chain C: Q.22, Q.93, T.94, N.97, N.936
- Ligands: CL.42
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:Q.93
NET.77: 5 residues within 4Å:- Chain E: Q.22, T.94, N.97, N.936
- Ligands: CL.68
No protein-ligand interaction detected (PLIP)NET.105: 6 residues within 4Å:- Chain G: Q.22, Q.93, T.94, N.97, N.936
- Ligands: CL.95
1 PLIP interactions:1 interactions with chain G- Hydrophobic interactions: G:Q.93
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., The structure of carbamoyl phosphate synthetase determined to 2.1 A resolution. Acta Crystallogr.,Sect.D (1999)
- Release Date
- 1998-06-17
- Peptides
- CARBAMOYL PHOSPHATE SYNTHETASE: ACEG
CARBAMOYL PHOSPHATE SYNTHETASE: BDFH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BC
EE
HG
KB
CD
FF
IH
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 16 x MN: MANGANESE (II) ION(Non-covalent)
- 29 x K: POTASSIUM ION(Non-covalent)
- 9 x PO4: PHOSPHATE ION(Non-functional Binders)
- 29 x CL: CHLORIDE ION(Non-functional Binders)
- 8 x GLN: GLUTAMINE(Non-covalent)
- 8 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x ORN: L-ornithine(Non-covalent)
- 4 x NET: TETRAETHYLAMMONIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., The structure of carbamoyl phosphate synthetase determined to 2.1 A resolution. Acta Crystallogr.,Sect.D (1999)
- Release Date
- 1998-06-17
- Peptides
- CARBAMOYL PHOSPHATE SYNTHETASE: ACEG
CARBAMOYL PHOSPHATE SYNTHETASE: BDFH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BC
EE
HG
KB
CD
FF
IH
L