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SMTL ID : 1coh.1

STRUCTURE OF HAEMOGLOBIN IN THE DEOXY QUATERNARY STATE WITH LIGAND BOUND AT THE ALPHA HAEMS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-2-2-mer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1:

17 residues within 4Å:

Chain A: T.39, Y.42, F.43, H.45, F.46, H.58, K.61, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, L.136
Ligands: CMO.2

18 PLIP interactions:

18 interactions with chain A,

Hydrophobic interactions: A:Y.42, A:F.43, A:F.43, A:K.61, A:L.83, A:L.86, A:L.91, A:V.93, A:V.93, A:N.97, A:F.98, A:F.98, A:L.101, A:L.136
Salt bridges: A:H.45, A:K.61
pi-Stacking: A:H.58
Metal complexes: A:H.87

HEM.4:

17 residues within 4Å:

Chain C: Y.42, F.43, H.45, F.46, H.58, K.61, A.65, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, L.136
Ligands: CMO.5

16 PLIP interactions:

16 interactions with chain C,

Hydrophobic interactions: C:F.43, C:F.43, C:F.43, C:A.65, C:L.83, C:L.86, C:L.91, C:V.93, C:V.93, C:N.97, C:F.98, C:L.136
Salt bridges: C:H.45, C:K.61
pi-Stacking: C:H.58
Metal complexes: C:H.87

2 x CMO: CARBON MONOXIDE(Non-functional Binders)

CMO.2:	3 residues within 4Å: Chain A: H.58, V.62 Ligands: HEM.1 No protein-ligand interaction detected (PLIP)
CMO.5:	3 residues within 4Å: Chain C: H.58, V.62 Ligands: HEM.4 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.58

2 x COH: PROTOPORPHYRIN IX CONTAINING CO(Non-covalent)

COH.3:	15 residues within 4Å: Chain B: F.41, F.42, H.63, K.66, V.67, A.70, L.88, L.91, H.92, L.96, V.98, N.102, F.103, L.106, L.141 18 PLIP interactions: 18 interactions with chain B, Hydrophobic interactions: B:F.41, B:F.41, B:F.42, B:F.42, B:F.42, B:K.66, B:V.67, B:L.88, B:L.91, B:L.96, B:V.98, B:V.98, B:N.102, B:L.106, B:L.141 Salt bridges: B:K.66 pi-Stacking: B:H.63 Metal complexes: B:H.92
COH.6:	15 residues within 4Å: Chain D: L.31, F.41, F.42, H.63, K.66, V.67, A.70, L.91, H.92, L.96, V.98, N.102, F.103, L.106, L.141 15 PLIP interactions: 15 interactions with chain D, Hydrophobic interactions: D:L.31, D:F.41, D:F.42, D:F.42, D:F.42, D:V.67, D:L.91, D:L.96, D:L.96, D:V.98, D:L.106, D:L.141 Salt bridges: D:K.66 pi-Stacking: D:H.63 Metal complexes: D:H.92

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Luisi, B. et al., Structure of haemoglobin in the deoxy quaternary state with ligand bound at the alpha haems. J.Mol.Biol. (1989)

Release Date

1990-01-15

Peptides

HEMOGLOBIN (FERROUS CARBONMONOXY) (ALPHA CHAIN): AC
HEMOGLOBIN (COBALTOUS DEOXY) (BETA CHAIN): BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

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NGLPV2D

HEMOGLOBIN (FERROUS CARBONMONOXY) (ALPHA CHAIN)

Toggle Identical (AC)

HEMOGLOBIN (COBALTOUS DEOXY) (BETA CHAIN)

Toggle Identical (BD)

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