SMTL ID : 1eyi.1

FRUCTOSE-1,6-BISPHOSPHATASE COMPLEX WITH MAGNESIUM, FRUCTOSE-6-PHOSPHATE AND PHOSPHATE (R-STATE)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

homo-tetramer

Ligands

4 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 16 residues within 4Å: Chain A: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, F.262, Y.264, K.274, L.275, E.280 Chain B: R.243 Ligands: MG.3, PO4.5 19 PLIP interactions: 16 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:D.121, A:G.122, A:N.212, A:Y.215, A:Y.244, A:M.248, A:Y.264, A:Y.264, A:K.274, A:R.276, A:E.280 Water bridges: A:S.124, A:S.124, A:S.124, A:S.124, B:R.243, B:R.243 Salt bridges: A:K.274, B:R.243 F6P.6: 16 residues within 4Å: Chain A: R.243 Chain B: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, F.262, Y.264, K.274, L.275, E.280 Ligands: MG.8, PO4.10 19 PLIP interactions: 16 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.121, B:G.122, B:N.212, B:Y.215, B:Y.244, B:M.248, B:Y.264, B:Y.264, B:K.274, B:R.276, B:E.280 Water bridges: B:S.124, B:S.124, B:S.124, B:S.124, A:R.243, A:R.243 Salt bridges: B:K.274, A:R.243 F6P.11: 16 residues within 4Å: Chain C: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, F.262, Y.264, K.274, L.275, E.280 Chain D: R.243 Ligands: MG.13, PO4.15 17 PLIP interactions: 14 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:D.121, C:G.122, C:N.212, C:Y.244, C:M.248, C:Y.264, C:K.274, C:R.276, C:E.280 Water bridges: C:S.124, C:S.124, C:S.124, C:S.124, D:R.243, D:R.243 Salt bridges: C:K.274, D:R.243 F6P.16: 16 residues within 4Å: Chain C: R.243 Chain D: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, F.262, Y.264, K.274, L.275, E.280 Ligands: MG.18, PO4.20 17 PLIP interactions: 14 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:D.121, D:G.122, D:N.212, D:Y.244, D:M.248, D:Y.264, D:K.274, D:R.276, D:E.280 Water bridges: D:S.124, D:S.124, D:S.124, D:S.124, C:R.243, C:R.243 Salt bridges: D:K.274, C:R.243

8 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: E.97, D.118, L.120, D.121 Ligands: MG.3, PO4.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.97, A:D.118, A:L.120, H2O.4 MG.3: 6 residues within 4Å: Chain A: D.118, D.121, E.280 Ligands: F6P.1, MG.2, PO4.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.118, A:D.121, A:E.280 MG.7: 6 residues within 4Å: Chain B: E.97, D.118, L.120, D.121 Ligands: MG.8, PO4.10 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.97, B:D.118, B:L.120, H2O.10 MG.8: 6 residues within 4Å: Chain B: D.118, D.121, E.280 Ligands: F6P.6, MG.7, PO4.10 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.118, B:D.121, B:E.280 MG.12: 6 residues within 4Å: Chain C: E.97, D.118, L.120, D.121 Ligands: MG.13, PO4.15 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.97, C:D.118, C:L.120, H2O.16 MG.13: 6 residues within 4Å: Chain C: D.118, D.121, E.280 Ligands: F6P.11, MG.12, PO4.15 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.118, C:D.121, C:E.280 MG.17: 6 residues within 4Å: Chain D: E.97, D.118, L.120, D.121 Ligands: MG.18, PO4.20 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.97, D:D.118, D:L.120, H2O.23 MG.18: 6 residues within 4Å: Chain D: D.118, D.121, E.280 Ligands: F6P.16, MG.17, PO4.20 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.118, D:D.121, D:E.280

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 7 residues within 4Å: Chain A: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.26, A:T.27, A:T.27, A:G.28, A:E.29, A:M.30, A:Y.113 Water bridges: A:T.31 Salt bridges: A:K.112 PO4.5: 12 residues within 4Å: Chain A: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.1, MG.2, MG.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.120, A:G.122, A:S.123 Water bridges: A:E.98, A:K.274 Salt bridges: A:R.276 PO4.9: 7 residues within 4Å: Chain B: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.26, B:T.27, B:T.27, B:G.28, B:E.29, B:M.30, B:Y.113 Water bridges: B:T.31 Salt bridges: B:K.112 PO4.10: 12 residues within 4Å: Chain B: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.6, MG.7, MG.8 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:L.120, B:G.122, B:S.123 Water bridges: B:E.98, B:K.274 Salt bridges: B:R.276 PO4.14: 7 residues within 4Å: Chain C: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:G.26, C:T.27, C:T.27, C:G.28, C:E.29, C:M.30 Water bridges: C:T.31 Salt bridges: C:K.112 PO4.15: 12 residues within 4Å: Chain C: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.11, MG.12, MG.13 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:L.120, C:G.122, C:S.123, C:E.280 Water bridges: C:D.68, C:K.274 Salt bridges: C:R.276 PO4.19: 7 residues within 4Å: Chain D: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:G.26, D:T.27, D:T.27, D:G.28, D:E.29, D:M.30 Water bridges: D:T.31 Salt bridges: D:K.112 PO4.20: 12 residues within 4Å: Chain D: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.16, MG.17, MG.18 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:L.120, D:G.122, D:S.123, D:E.280 Water bridges: D:D.68, D:K.274 Salt bridges: D:R.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choe, J.Y. et al., Crystal structures of fructose 1,6-bisphosphatase: mechanism of catalysis and allosteric inhibition revealed in product complexes. Biochemistry (2000)

Release Date

2000-08-09

Peptides

FRUCTOSE-1,6-BISPHOSPHATASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

FRUCTOSE-1,6-BISPHOSPHATASE

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