SMTL ID : 1nv5.2 (1 other biounit)

Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6-Phosphate, Phosphate, EDTA and Thallium (5 mM)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 17 residues within 4Å: Chain A: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, E.280 Chain B: R.243 Ligands: MG.2, PO4.5, TL.6, TL.11 21 PLIP interactions: 17 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:D.121, A:G.122, A:N.212, A:Y.215, A:Y.244, A:Y.244, A:M.248, A:Y.264, A:K.274, A:E.280 Water bridges: A:S.123, A:S.124, A:S.124, A:Y.215, A:K.274, A:K.274, B:R.243, B:R.243, B:R.243 Salt bridges: A:K.274, B:R.243 F6P.12: 17 residues within 4Å: Chain A: R.243 Chain B: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, E.280 Ligands: MG.13, PO4.16, TL.17, TL.22 21 PLIP interactions: 17 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:D.121, B:G.122, B:N.212, B:Y.215, B:Y.244, B:Y.244, B:M.248, B:Y.264, B:K.274, B:E.280 Water bridges: B:S.123, B:S.124, B:S.124, B:Y.215, B:K.274, B:K.274, A:R.243, A:R.243, A:R.243 Salt bridges: B:K.274, A:R.243 F6P.23: 17 residues within 4Å: Chain C: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, E.280 Chain D: R.243 Ligands: MG.24, PO4.27, TL.28, TL.33 18 PLIP interactions: 14 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:D.121, C:G.122, C:N.212, C:Y.244, C:M.248, C:K.274, C:E.280 Water bridges: C:S.123, C:S.124, C:S.124, C:Y.215, C:K.274, C:K.274, D:R.243, D:R.243, D:R.243 Salt bridges: C:K.274, D:R.243 F6P.34: 17 residues within 4Å: Chain C: R.243 Chain D: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, E.280 Ligands: MG.35, PO4.38, TL.39, TL.44 18 PLIP interactions: 14 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:D.121, D:G.122, D:N.212, D:Y.244, D:M.248, D:K.274, D:E.280 Water bridges: D:S.123, D:S.124, D:S.124, D:Y.215, D:K.274, D:K.274, C:R.243, C:R.243, C:R.243 Salt bridges: D:K.274, C:R.243

8 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 7 residues within 4Å: Chain A: D.118, D.121, E.280 Ligands: F6P.1, PO4.5, TL.6, TL.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.118, A:D.121, A:E.280 MG.3: 9 residues within 4Å: Chain A: D.74, E.97, E.98, D.118, L.120 Ligands: PO4.5, TL.7, TL.8, TL.9 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.97, A:D.118, A:L.120 MG.13: 7 residues within 4Å: Chain B: D.118, D.121, E.280 Ligands: F6P.12, PO4.16, TL.17, TL.18 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.118, B:D.121, B:E.280 MG.14: 9 residues within 4Å: Chain B: D.74, E.97, E.98, D.118, L.120 Ligands: PO4.16, TL.18, TL.19, TL.20 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.97, B:D.118, B:L.120 MG.24: 7 residues within 4Å: Chain C: D.118, D.121, E.280 Ligands: F6P.23, PO4.27, TL.28, TL.29 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.118, C:D.121, C:E.280 MG.25: 9 residues within 4Å: Chain C: D.74, E.97, E.98, D.118, L.120 Ligands: PO4.27, TL.29, TL.30, TL.31 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.97, C:D.118, C:L.120 MG.35: 7 residues within 4Å: Chain D: D.118, D.121, E.280 Ligands: F6P.34, PO4.38, TL.39, TL.40 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.118, D:D.121, D:E.280 MG.36: 9 residues within 4Å: Chain D: D.74, E.97, E.98, D.118, L.120 Ligands: PO4.38, TL.40, TL.41, TL.42 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.97, D:D.118, D:L.120

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 7 residues within 4Å: Chain A: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.27, A:T.27, A:G.28, A:E.29, A:M.30, A:Y.113 Water bridges: A:T.31 Salt bridges: A:K.112 PO4.5: 16 residues within 4Å: Chain A: D.68, E.97, D.118, L.120, D.121, G.122, S.123, E.280 Ligands: F6P.1, MG.2, MG.3, TL.6, TL.7, TL.8, TL.9, TL.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.120, A:G.122, A:S.123 Water bridges: A:S.124 PO4.15: 7 residues within 4Å: Chain B: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:T.27, B:T.27, B:G.28, B:E.29, B:M.30, B:Y.113 Water bridges: B:T.31 Salt bridges: B:K.112 PO4.16: 16 residues within 4Å: Chain B: D.68, E.97, D.118, L.120, D.121, G.122, S.123, E.280 Ligands: F6P.12, MG.13, MG.14, TL.17, TL.18, TL.19, TL.20, TL.21 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.120, B:G.122, B:S.123 Water bridges: B:S.124 PO4.26: 7 residues within 4Å: Chain C: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:T.27, C:T.27, C:G.28, C:E.29, C:M.30 Water bridges: C:T.31 Salt bridges: C:K.112 PO4.27: 16 residues within 4Å: Chain C: D.68, E.97, D.118, L.120, D.121, G.122, S.123, E.280 Ligands: F6P.23, MG.24, MG.25, TL.28, TL.29, TL.30, TL.31, TL.32 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:L.120, C:G.122, C:S.123, C:E.280 Water bridges: C:S.124 PO4.37: 7 residues within 4Å: Chain D: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:T.27, D:T.27, D:G.28, D:E.29, D:M.30 Water bridges: D:T.31 Salt bridges: D:K.112 PO4.38: 16 residues within 4Å: Chain D: D.68, E.97, D.118, L.120, D.121, G.122, S.123, E.280 Ligands: F6P.34, MG.35, MG.36, TL.39, TL.40, TL.41, TL.42, TL.43 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:L.120, D:G.122, D:S.123, D:E.280 Water bridges: D:S.124

24 x TL: THALLIUM (I) ION(Covalent)(Non-covalent)

TL.6: 8 residues within 4Å: Chain A: D.118, D.121, G.122, E.280 Ligands: F6P.1, MG.2, PO4.5, TL.7 Ligand excluded by PLIP TL.7: 9 residues within 4Å: Chain A: E.97, D.118, L.120, D.121 Ligands: MG.2, MG.3, PO4.5, TL.6, TL.9 Ligand excluded by PLIP TL.8: 7 residues within 4Å: Chain A: N.64, D.68, D.74, E.97, E.98 Ligands: MG.3, PO4.5 Ligand excluded by PLIP TL.9: 6 residues within 4Å: Chain A: D.74, L.120, S.123 Ligands: MG.3, PO4.5, TL.7 Ligand excluded by PLIP TL.10: 5 residues within 4Å: Chain A: D.68, E.97, R.276 Ligands: PO4.5, TL.11 Ligand excluded by PLIP TL.11: 6 residues within 4Å: Chain A: K.274, L.275, R.276, E.280 Ligands: F6P.1, TL.10 Ligand excluded by PLIP TL.17: 8 residues within 4Å: Chain B: D.118, D.121, G.122, E.280 Ligands: F6P.12, MG.13, PO4.16, TL.18 Ligand excluded by PLIP TL.18: 9 residues within 4Å: Chain B: E.97, D.118, L.120, D.121 Ligands: MG.13, MG.14, PO4.16, TL.17, TL.20 Ligand excluded by PLIP TL.19: 7 residues within 4Å: Chain B: N.64, D.68, D.74, E.97, E.98 Ligands: MG.14, PO4.16 Ligand excluded by PLIP TL.20: 6 residues within 4Å: Chain B: D.74, L.120, S.123 Ligands: MG.14, PO4.16, TL.18 Ligand excluded by PLIP TL.21: 5 residues within 4Å: Chain B: D.68, E.97, R.276 Ligands: PO4.16, TL.22 Ligand excluded by PLIP TL.22: 6 residues within 4Å: Chain B: K.274, L.275, R.276, E.280 Ligands: F6P.12, TL.21 Ligand excluded by PLIP TL.28: 8 residues within 4Å: Chain C: D.118, D.121, G.122, E.280 Ligands: F6P.23, MG.24, PO4.27, TL.29 Ligand excluded by PLIP TL.29: 9 residues within 4Å: Chain C: E.97, D.118, L.120, D.121 Ligands: MG.24, MG.25, PO4.27, TL.28, TL.31 Ligand excluded by PLIP TL.30: 7 residues within 4Å: Chain C: N.64, D.68, D.74, E.97, E.98 Ligands: MG.25, PO4.27 Ligand excluded by PLIP TL.31: 6 residues within 4Å: Chain C: D.74, L.120, S.123 Ligands: MG.25, PO4.27, TL.29 Ligand excluded by PLIP TL.32: 5 residues within 4Å: Chain C: D.68, E.97, R.276 Ligands: PO4.27, TL.33 Ligand excluded by PLIP TL.33: 6 residues within 4Å: Chain C: K.274, L.275, R.276, E.280 Ligands: F6P.23, TL.32 Ligand excluded by PLIP TL.39: 8 residues within 4Å: Chain D: D.118, D.121, G.122, E.280 Ligands: F6P.34, MG.35, PO4.38, TL.40 Ligand excluded by PLIP TL.40: 9 residues within 4Å: Chain D: E.97, D.118, L.120, D.121 Ligands: MG.35, MG.36, PO4.38, TL.39, TL.42 Ligand excluded by PLIP TL.41: 7 residues within 4Å: Chain D: N.64, D.68, D.74, E.97, E.98 Ligands: MG.36, PO4.38 Ligand excluded by PLIP TL.42: 6 residues within 4Å: Chain D: D.74, L.120, S.123 Ligands: MG.36, PO4.38, TL.40 Ligand excluded by PLIP TL.43: 5 residues within 4Å: Chain D: D.68, E.97, R.276 Ligands: PO4.38, TL.44 Ligand excluded by PLIP TL.44: 6 residues within 4Å: Chain D: K.274, L.275, R.276, E.280 Ligands: F6P.34, TL.43 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choe, J.Y. et al., Interaction of Tl+ with product complexes of fructose-1,6-bisphosphatase. J.BIOL.CHEM. (2003)

Release Date

2003-07-08

Peptides

Fructose-1,6-bisphosphatase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Fructose-1,6-bisphosphatase

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