SMTL ID : 2qvu.1

Porcine Liver Fructose-1,6-bisphosphatase cocrystallized with Fru-2,6-P2 and Mg2+, I(T)-state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

4 x FDP: 2,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)

FDP.1: 17 residues within 4Å: Chain A: D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Chain B: R.243 Ligands: MG.3 22 PLIP interactions: 20 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.118, A:D.121, A:D.121, A:G.122, A:S.123, A:S.124, A:N.212, A:Y.244, A:M.248, A:Y.264, A:K.274, A:R.276 Water bridges: A:S.124, A:S.124, A:N.125, A:Y.215, A:K.274, A:R.276, B:R.243 Salt bridges: A:K.274, A:K.274, B:R.243 FDP.5: 17 residues within 4Å: Chain A: R.243 Chain B: D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Ligands: MG.7 21 PLIP interactions: 18 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.118, B:D.121, B:G.122, B:S.123, B:S.124, B:N.212, B:Y.215, B:M.248, B:K.274, B:R.276 Water bridges: B:S.124, B:S.124, B:N.125, B:Y.215, B:K.274, B:R.276, A:R.243, A:R.243 Salt bridges: B:K.274, B:K.274, A:R.243 FDP.9: 17 residues within 4Å: Chain C: D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Chain D: R.243 Ligands: MG.11 22 PLIP interactions: 20 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:D.118, C:D.121, C:D.121, C:G.122, C:S.123, C:S.124, C:N.212, C:Y.244, C:M.248, C:Y.264, C:K.274, C:R.276 Water bridges: C:S.124, C:S.124, C:N.125, C:Y.215, C:K.274, C:R.276, D:R.243 Salt bridges: C:K.274, C:K.274, D:R.243 FDP.13: 17 residues within 4Å: Chain C: R.243 Chain D: D.121, G.122, S.123, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Ligands: MG.15 21 PLIP interactions: 18 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:D.118, D:D.121, D:G.122, D:S.123, D:S.124, D:N.212, D:Y.215, D:M.248, D:K.274, D:R.276 Water bridges: D:S.124, D:S.124, D:N.125, D:Y.215, D:K.274, D:R.276, C:R.243, C:R.243 Salt bridges: D:K.274, D:K.274, C:R.243

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 7 residues within 4Å: Chain A: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.27, A:T.27, A:T.27, A:G.28, A:E.29, A:M.30, A:Y.113 Salt bridges: A:K.112 PO4.6: 8 residues within 4Å: Chain B: G.26, T.27, G.28, E.29, M.30, K.112, Y.113, R.140 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:T.27, B:T.27, B:T.27, B:G.28, B:E.29, B:M.30 Water bridges: B:T.31 Salt bridges: B:K.112, B:R.140 PO4.10: 7 residues within 4Å: Chain C: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:T.27, C:T.27, C:T.27, C:G.28, C:E.29, C:M.30, C:Y.113 Salt bridges: C:K.112 PO4.14: 8 residues within 4Å: Chain D: G.26, T.27, G.28, E.29, M.30, K.112, Y.113, R.140 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:T.27, D:T.27, D:T.27, D:G.28, D:E.29, D:M.30 Water bridges: D:T.31 Salt bridges: D:K.112, D:R.140

8 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: D.118, D.121, R.276, E.280 Ligands: FDP.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.118, A:D.121, A:E.280, H2O.7 MG.4: 1 residues within 4Å: Chain A: E.97 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:E.97, H2O.1, H2O.2, H2O.2, H2O.5, H2O.5 MG.7: 5 residues within 4Å: Chain B: D.118, D.121, R.276, E.280 Ligands: FDP.5 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.118, B:D.121, B:E.280, H2O.16 MG.8: 1 residues within 4Å: Chain B: E.97 6 PLIP interactions: 1 interactions with chain B, 5 Ligand-Water interactions Metal complexes: B:E.97, H2O.12, H2O.13, H2O.15, H2O.16, H2O.16 MG.11: 5 residues within 4Å: Chain C: D.118, D.121, R.276, E.280 Ligands: FDP.9 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.118, C:D.121, C:E.280, H2O.28 MG.12: 1 residues within 4Å: Chain C: E.97 6 PLIP interactions: 1 interactions with chain C, 5 Ligand-Water interactions Metal complexes: C:E.97, H2O.22, H2O.23, H2O.23, H2O.25, H2O.26 MG.15: 5 residues within 4Å: Chain D: D.118, D.121, R.276, E.280 Ligands: FDP.13 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.118, D:D.121, D:E.280, H2O.37 MG.16: 1 residues within 4Å: Chain D: E.97 6 PLIP interactions: 1 interactions with chain D, 5 Ligand-Water interactions Metal complexes: D:E.97, H2O.32, H2O.34, H2O.36, H2O.37, H2O.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hines, J.K. et al., Structures of mammalian and bacterial fructose-1,6-bisphosphatase reveal the basis for synergism in AMP/fructose 2,6-bisphosphate inhibition. J.Biol.Chem. (2007)

Release Date

2007-10-23

Peptides

Fructose-1,6-bisphosphatase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Fructose-1,6-bisphosphatase 1

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