SMTL ID : 1nuw.2 (1 other biounit)

Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6-Phosphate and Phosphate at pH 9.6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-tetramer

Ligands

4 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 16 residues within 4Å: Chain A: D.121, G.122, S.123, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Chain B: R.243 Ligands: PO3.2 22 PLIP interactions: 20 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.121, A:G.122, A:S.123, A:N.212, A:Y.215, A:Y.244, A:Y.244, A:M.248, A:Y.264, A:K.274, A:R.276 Water bridges: A:S.124, A:S.124, A:S.124, A:Y.215, A:V.249, A:Y.264, A:E.280, A:E.280, B:R.243 Salt bridges: A:K.274, B:R.243 F6P.7: 16 residues within 4Å: Chain A: R.243 Chain B: D.121, G.122, S.123, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Ligands: PO3.8 22 PLIP interactions: 20 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.121, B:G.122, B:S.123, B:N.212, B:Y.215, B:Y.244, B:Y.244, B:M.248, B:Y.264, B:K.274, B:R.276 Water bridges: B:S.124, B:S.124, B:S.124, B:Y.215, B:V.249, B:Y.264, B:E.280, B:E.280, A:R.243 Salt bridges: B:K.274, A:R.243 F6P.13: 16 residues within 4Å: Chain C: D.121, G.122, S.123, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Chain D: R.243 Ligands: PO3.14 19 PLIP interactions: 17 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:D.121, C:G.122, C:S.123, C:N.212, C:Y.244, C:M.248, C:K.274, C:R.276 Water bridges: C:S.124, C:S.124, C:S.124, C:Y.215, C:V.249, C:Y.264, C:E.280, C:E.280, D:R.243 Salt bridges: C:K.274, D:R.243 F6P.19: 16 residues within 4Å: Chain C: R.243 Chain D: D.121, G.122, S.123, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Ligands: PO3.20 19 PLIP interactions: 17 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:D.121, D:G.122, D:S.123, D:N.212, D:Y.244, D:M.248, D:K.274, D:R.276 Water bridges: D:S.124, D:S.124, D:S.124, D:Y.215, D:V.249, D:Y.264, D:E.280, D:E.280, C:R.243 Salt bridges: D:K.274, C:R.243

4 x PO3: PHOSPHITE ION(Non-covalent)

PO3.2: 13 residues within 4Å: Chain A: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.1, MG.3, MG.4, MG.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.122, A:S.123 Water bridges: A:S.123, A:S.123 Salt bridges: A:R.276 PO3.8: 13 residues within 4Å: Chain B: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.7, MG.9, MG.10, MG.12 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.122, B:S.123 Water bridges: B:S.123, B:S.123 Salt bridges: B:R.276 PO3.14: 13 residues within 4Å: Chain C: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.13, MG.15, MG.16, MG.18 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:G.122, C:S.123, C:E.280 Water bridges: C:D.68, C:D.68 Salt bridges: C:R.276 PO3.20: 13 residues within 4Å: Chain D: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.19, MG.21, MG.22, MG.24 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:G.122, D:S.123, D:E.280 Water bridges: D:S.123, D:S.123 Salt bridges: D:R.276

16 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 8 residues within 4Å: Chain A: E.97, D.118, L.120, D.121 Ligands: PO3.2, MG.4, MG.5, MG.6 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.97, A:D.118, A:L.120, H2O.3, H2O.6 MG.4: 7 residues within 4Å: Chain A: E.97, D.118, D.121, R.276, E.280 Ligands: PO3.2, MG.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.97, A:D.118, A:D.121, A:E.280 MG.5: 6 residues within 4Å: Chain A: N.64, D.68, E.97, E.98 Ligands: MG.3, MG.6 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.97, A:E.98, H2O.6, H2O.8 MG.6: 7 residues within 4Å: Chain A: N.64, D.68, E.97, R.276 Ligands: PO3.2, MG.3, MG.5 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.68, H2O.5, H2O.6, H2O.8 MG.9: 8 residues within 4Å: Chain B: E.97, D.118, L.120, D.121 Ligands: PO3.8, MG.10, MG.11, MG.12 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.97, B:D.118, B:L.120, H2O.11, H2O.14 MG.10: 7 residues within 4Å: Chain B: E.97, D.118, D.121, R.276, E.280 Ligands: PO3.8, MG.9 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.97, B:D.118, B:D.121, B:E.280 MG.11: 6 residues within 4Å: Chain B: N.64, D.68, E.97, E.98 Ligands: MG.9, MG.12 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.97, B:E.98, H2O.14, H2O.16 MG.12: 7 residues within 4Å: Chain B: N.64, D.68, E.97, R.276 Ligands: PO3.8, MG.9, MG.11 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.68, H2O.13, H2O.14, H2O.16 MG.15: 8 residues within 4Å: Chain C: E.97, D.118, L.120, D.121 Ligands: PO3.14, MG.16, MG.17, MG.18 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.97, C:D.118, C:L.120, H2O.19, H2O.22 MG.16: 7 residues within 4Å: Chain C: E.97, D.118, D.121, R.276, E.280 Ligands: PO3.14, MG.15 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.97, C:D.118, C:D.121, C:E.280 MG.17: 6 residues within 4Å: Chain C: N.64, D.68, E.97, E.98 Ligands: MG.15, MG.18 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.97, C:E.98, H2O.22, H2O.24 MG.18: 7 residues within 4Å: Chain C: N.64, D.68, E.97, R.276 Ligands: PO3.14, MG.15, MG.17 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.68, H2O.21, H2O.22, H2O.24 MG.21: 8 residues within 4Å: Chain D: E.97, D.118, L.120, D.121 Ligands: PO3.20, MG.22, MG.23, MG.24 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.97, D:D.118, D:L.120, H2O.27, H2O.30 MG.22: 7 residues within 4Å: Chain D: E.97, D.118, D.121, R.276, E.280 Ligands: PO3.20, MG.21 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.97, D:D.118, D:D.121, D:E.280 MG.23: 6 residues within 4Å: Chain D: N.64, D.68, E.97, E.98 Ligands: MG.21, MG.24 4 PLIP interactions: 2 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.97, D:E.98, H2O.30, H2O.32 MG.24: 7 residues within 4Å: Chain D: N.64, D.68, E.97, R.276 Ligands: PO3.20, MG.21, MG.23 4 PLIP interactions: 1 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:D.68, H2O.29, H2O.30, H2O.32

Links

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Citation

Choe, J.Y. et al., Metaphosphate in the active site of fructose-1,6-bisphosphatase. J.BIOL.CHEM. (2003)

Release Date

2003-07-08

Peptides

Fructose-1,6-bisphosphatase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Fructose-1,6-bisphosphatase

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