SMTL ID : 1nv4.2 (1 other biounit)

Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6-Phosphate, Phosphate, EDTA and Thallium (1 mM)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 17 residues within 4Å: Chain A: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, E.280 Chain B: R.243 Ligands: MG.3, PO4.5, TL.7, TL.8 20 PLIP interactions: 17 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:D.121, A:G.122, A:N.212, A:Y.215, A:Y.244, A:Y.244, A:M.248, A:Y.264, A:K.274 Water bridges: A:S.123, A:S.123, A:S.124, A:S.124, A:S.124, A:Y.215, A:Y.264, B:R.243, B:R.243 Salt bridges: A:K.274, B:R.243 F6P.9: 17 residues within 4Å: Chain A: R.243 Chain B: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, E.280 Ligands: MG.11, PO4.13, TL.15, TL.16 20 PLIP interactions: 17 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.121, B:G.122, B:N.212, B:Y.215, B:Y.244, B:Y.244, B:M.248, B:Y.264, B:K.274 Water bridges: B:S.123, B:S.123, B:S.124, B:S.124, B:S.124, B:Y.215, B:Y.264, A:R.243, A:R.243 Salt bridges: B:K.274, A:R.243 F6P.17: 17 residues within 4Å: Chain C: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, E.280 Chain D: R.243 Ligands: MG.19, PO4.21, TL.23, TL.24 17 PLIP interactions: 14 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:D.121, C:G.122, C:N.212, C:Y.244, C:M.248, C:K.274 Water bridges: C:S.123, C:S.123, C:S.124, C:S.124, C:S.124, C:Y.215, C:Y.264, D:R.243, D:R.243 Salt bridges: C:K.274, D:R.243 F6P.25: 17 residues within 4Å: Chain C: R.243 Chain D: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, E.280 Ligands: MG.27, PO4.29, TL.31, TL.32 17 PLIP interactions: 14 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:D.121, D:G.122, D:N.212, D:Y.244, D:M.248, D:K.274 Water bridges: D:S.123, D:S.123, D:S.124, D:S.124, D:S.124, D:Y.215, D:Y.264, C:R.243, C:R.243 Salt bridges: D:K.274, C:R.243

8 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 8 residues within 4Å: Chain A: E.97, D.118, L.120, D.121 Ligands: MG.3, PO4.5, TL.6, TL.7 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.97, A:D.118, A:L.120, H2O.3 MG.3: 7 residues within 4Å: Chain A: D.118, D.121, E.280 Ligands: F6P.1, MG.2, PO4.5, TL.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.118, A:D.121, A:E.280 MG.10: 8 residues within 4Å: Chain B: E.97, D.118, L.120, D.121 Ligands: MG.11, PO4.13, TL.14, TL.15 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.97, B:D.118, B:L.120, H2O.10 MG.11: 7 residues within 4Å: Chain B: D.118, D.121, E.280 Ligands: F6P.9, MG.10, PO4.13, TL.15 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.118, B:D.121, B:E.280 MG.18: 8 residues within 4Å: Chain C: E.97, D.118, L.120, D.121 Ligands: MG.19, PO4.21, TL.22, TL.23 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.97, C:D.118, C:L.120, H2O.18 MG.19: 7 residues within 4Å: Chain C: D.118, D.121, E.280 Ligands: F6P.17, MG.18, PO4.21, TL.23 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.118, C:D.121, C:E.280 MG.26: 8 residues within 4Å: Chain D: E.97, D.118, L.120, D.121 Ligands: MG.27, PO4.29, TL.30, TL.31 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.97, D:D.118, D:L.120, H2O.26 MG.27: 7 residues within 4Å: Chain D: D.118, D.121, E.280 Ligands: F6P.25, MG.26, PO4.29, TL.31 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.118, D:D.121, D:E.280

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 7 residues within 4Å: Chain A: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.27, A:T.27, A:G.28, A:E.29, A:M.30, A:Y.113 Salt bridges: A:K.112 PO4.5: 14 residues within 4Å: Chain A: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.1, MG.2, MG.3, TL.6, TL.7 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.122, A:S.123, A:R.276, A:E.280 Water bridges: A:E.98, A:S.124 PO4.12: 7 residues within 4Å: Chain B: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.27, B:T.27, B:G.28, B:E.29, B:M.30, B:Y.113 Salt bridges: B:K.112 PO4.13: 14 residues within 4Å: Chain B: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.9, MG.10, MG.11, TL.14, TL.15 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:L.120, B:G.122, B:S.123, B:R.276, B:R.276 Water bridges: B:E.98, B:S.124 PO4.20: 7 residues within 4Å: Chain C: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:T.27, C:T.27, C:G.28, C:E.29, C:M.30 Salt bridges: C:K.112 PO4.21: 14 residues within 4Å: Chain C: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.17, MG.18, MG.19, TL.22, TL.23 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:L.120, C:G.122, C:S.123 Water bridges: C:D.68, C:S.124 PO4.28: 7 residues within 4Å: Chain D: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:T.27, D:T.27, D:G.28, D:E.29, D:M.30 Salt bridges: D:K.112 PO4.29: 14 residues within 4Å: Chain D: D.68, E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.25, MG.26, MG.27, TL.30, TL.31 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:L.120, D:G.122, D:S.123, D:R.276, D:R.276, D:E.280, D:E.280, D:E.280 Water bridges: D:D.68, D:S.124

12 x TL: THALLIUM (I) ION(Non-covalent)(Covalent)

TL.6: 7 residues within 4Å: Chain A: D.74, E.97, E.98, D.118, L.120 Ligands: MG.2, PO4.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.97, A:D.118, A:L.120, H2O.3 TL.7: 7 residues within 4Å: Chain A: D.118, D.121, E.280 Ligands: F6P.1, MG.2, MG.3, PO4.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.118, A:D.121, A:E.280 TL.8: 5 residues within 4Å: Chain A: K.274, L.275, R.276, E.280 Ligands: F6P.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.280 TL.14: 7 residues within 4Å: Chain B: D.74, E.97, E.98, D.118, L.120 Ligands: MG.10, PO4.13 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.97, B:D.118, B:L.120, H2O.10 TL.15: 7 residues within 4Å: Chain B: D.118, D.121, E.280 Ligands: F6P.9, MG.10, MG.11, PO4.13 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.118, B:D.121, B:E.280 TL.16: 5 residues within 4Å: Chain B: K.274, L.275, R.276, E.280 Ligands: F6P.9 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.280 TL.22: 7 residues within 4Å: Chain C: D.74, E.97, E.98, D.118, L.120 Ligands: MG.18, PO4.21 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.97, C:D.118, C:L.120, H2O.18 TL.23: 7 residues within 4Å: Chain C: D.118, D.121, E.280 Ligands: F6P.17, MG.18, MG.19, PO4.21 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.118, C:D.121, C:E.280 TL.24: 5 residues within 4Å: Chain C: K.274, L.275, R.276, E.280 Ligands: F6P.17 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.280 TL.30: 7 residues within 4Å: Chain D: D.74, E.97, E.98, D.118, L.120 Ligands: MG.26, PO4.29 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.97, D:D.118, D:L.120, H2O.26 TL.31: 7 residues within 4Å: Chain D: D.118, D.121, E.280 Ligands: F6P.25, MG.26, MG.27, PO4.29 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.118, D:D.121, D:E.280 TL.32: 5 residues within 4Å: Chain D: K.274, L.275, R.276, E.280 Ligands: F6P.25 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:E.280

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choe, J.Y. et al., Interaction of Tl+ with product complexes of fructose-1,6-bisphosphatase. J.BIOL.CHEM. (2003)

Release Date

2003-07-08

Peptides

Fructose-1,6-bisphosphatase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Fructose-1,6-bisphosphatase

Related Entries With Identical Sequence