SMTL ID : 1hxs.2 (3 other biounits)

CRYSTAL STRUCTURE OF MAHONEY STRAIN OF POLIOVIRUS AT 2.2A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 15 residues within 4Å: Chain A: I.110, Y.112, F.130, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, N.235, F.237 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.110, A:Y.112, A:F.130, A:L.134, A:Y.159, A:Y.159, A:Y.159, A:I.183, A:V.196, A:V.199, A:Y.205, A:F.237, A:F.237 Hydrogen bonds: A:Y.112, A:Y.112 PLM.3: 15 residues within 4Å: Chain E: I.110, Y.112, F.130, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, N.235, F.237 15 PLIP interactions: 15 interactions with chain E Hydrophobic interactions: E:I.110, E:Y.112, E:F.130, E:L.134, E:Y.159, E:Y.159, E:Y.159, E:I.183, E:V.196, E:V.199, E:Y.205, E:F.237, E:F.237 Hydrogen bonds: E:Y.112, E:Y.112 PLM.5: 15 residues within 4Å: Chain I: I.110, Y.112, F.130, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, N.235, F.237 15 PLIP interactions: 15 interactions with chain I Hydrophobic interactions: I:I.110, I:Y.112, I:F.130, I:L.134, I:Y.159, I:Y.159, I:Y.159, I:I.183, I:V.196, I:V.199, I:Y.205, I:F.237, I:F.237 Hydrogen bonds: I:Y.112, I:Y.112 PLM.7: 15 residues within 4Å: Chain M: I.110, Y.112, F.130, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, N.235, F.237 15 PLIP interactions: 15 interactions with chain M Hydrophobic interactions: M:I.110, M:Y.112, M:F.130, M:L.134, M:Y.159, M:Y.159, M:Y.159, M:I.183, M:V.196, M:V.199, M:Y.205, M:F.237, M:F.237 Hydrogen bonds: M:Y.112, M:Y.112 PLM.9: 15 residues within 4Å: Chain Q: I.110, Y.112, F.130, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, N.235, F.237 15 PLIP interactions: 15 interactions with chain Q Hydrophobic interactions: Q:I.110, Q:Y.112, Q:F.130, Q:L.134, Q:Y.159, Q:Y.159, Q:Y.159, Q:I.183, Q:V.196, Q:V.199, Q:Y.205, Q:F.237, Q:F.237 Hydrogen bonds: Q:Y.112, Q:Y.112

5 x MYR: MYRISTIC ACID(Covalent)

MYR.2: 10 residues within 4Å: Chain A: G.6 Chain D: G.1, A.2, I.29, Y.31 Chain E: S.7 Chain H: V.4, T.27, I.29, Y.31 3 PLIP interactions: 1 interactions with chain H, 2 interactions with chain D Hydrogen bonds: H:T.27 Hydrophobic interactions: D:I.29, D:Y.31 MYR.4: 10 residues within 4Å: Chain E: G.6 Chain H: G.1, A.2, I.29, Y.31 Chain I: S.7 Chain L: V.4, T.27, I.29, Y.31 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:I.29, H:Y.31 MYR.6: 10 residues within 4Å: Chain I: G.6 Chain L: G.1, A.2, I.29, Y.31 Chain M: S.7 Chain P: V.4, T.27, I.29, Y.31 2 PLIP interactions: 2 interactions with chain L Hydrophobic interactions: L:I.29, L:Y.31 MYR.8: 10 residues within 4Å: Chain M: G.6 Chain P: G.1, A.2, I.29, Y.31 Chain Q: S.7 Chain T: V.4, T.27, I.29, Y.31 3 PLIP interactions: 1 interactions with chain T, 2 interactions with chain P Hydrogen bonds: T:T.27 Hydrophobic interactions: P:I.29, P:Y.31 MYR.10: 10 residues within 4Å: Chain A: S.7 Chain D: V.4, T.27, I.29, Y.31 Chain Q: G.6 Chain T: G.1, A.2, I.29, Y.31 3 PLIP interactions: 2 interactions with chain T, 1 interactions with chain D Hydrophobic interactions: T:I.29, T:Y.31 Hydrogen bonds: D:T.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller, S.T. et al., Ab initio phasing of high-symmetry macromolecular complexes: successful phasing of authentic poliovirus data to 3.0 A resolution. J.Mol.Biol. (2001)

Release Date

2002-01-16

Peptides

GENOME POLYPROTEIN, COAT PROTEIN VP1: AEIMQ
GENOME POLYPROTEIN, COAT PROTEIN VP2: BFJNR
GENOME POLYPROTEIN, COAT PROTEIN VP3: CGKOS
GENOME POLYPROTEIN, COAT PROTEIN VP4: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

B
2

F
2

J
2

N
2

R
2

C
3

G
3

K
3

O
3

S
3

D
4

H
4

L
4

P
4

T
4

GENOME POLYPROTEIN, COAT PROTEIN VP1

GENOME POLYPROTEIN, COAT PROTEIN VP2

GENOME POLYPROTEIN, COAT PROTEIN VP3

GENOME POLYPROTEIN, COAT PROTEIN VP4

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