SMTL ID : 3j9f.1 (3 other biounits)

Poliovirus complexed with soluble, deglycosylated poliovirus receptor (Pvr) at 4 degrees C

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)

NAG-NAG-BMA.1: 5 residues within 4Å: Chain E: Y.23, V.68, A.69, N.78, S.80 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.5: 5 residues within 4Å: Chain F: G.75, K.76, N.77, N.96 Ligands: NAG-NAG.4 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- FUC: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-FUC.2: 4 residues within 4Å: Chain E: E.91, G.92, N.93, W.111 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 1 residues within 4Å: Chain F: N.47 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain F: N.77, T.94 Ligands: NAG-NAG-BMA.5 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.6: 2 residues within 4Å: Chain G: P.64, N.66 No protein-ligand interaction detected (PLIP)

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.7: 15 residues within 4Å: Chain A: I.110, Y.112, F.130, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, N.235, F.237 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.110, A:Y.112, A:F.130, A:L.134, A:Y.159, A:Y.159, A:Y.159, A:I.183, A:V.196, A:V.199, A:Y.205, A:F.237, A:F.237 Hydrogen bonds: A:Y.112

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 3 residues within 4Å: Chain G: N.72, T.74, Q.81 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Strauss, M. et al., Nectin-Like Interactions between Poliovirus and Its Receptor Trigger Conformational Changes Associated with Cell Entry. J.Virol. (2015)

Release Date

2015-02-11

Peptides

Protein VP1: A
Protein VP2: B
Protein VP3: C
Protein VP4: D
Poliovirus receptor: E
Poliovirus receptor: F
Poliovirus receptor: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

D
4

E
7

F
8

G
9

Protein VP1

Protein VP2

Protein VP3

Protein VP4

Poliovirus receptor

Poliovirus receptor

Poliovirus receptor

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