SMTL ID : 3j8f.4 (3 other biounits)

Cryo-EM reconstruction of poliovirus-receptor complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.70 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 2 residues within 4Å: Chain E: V.95, N.105 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.5: 5 residues within 4Å: Chain E: G.216, K.217, N.218, N.237 Ligands: NAG-NAG.4 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- BMA- FUC: beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA-FUC.2: 3 residues within 4Å: Chain E: G.119, N.120, W.138 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.120

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 1 residues within 4Å: Chain E: N.188 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain E: N.218 Ligands: NAG-NAG-BMA.5 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.6: 3 residues within 4Å: Chain E: P.305, I.306, N.307 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 3 residues within 4Å: Chain E: N.313, T.315, Q.322 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:N.313, E:T.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Strauss, M. et al., Nectin-Like Interactions between Poliovirus and Its Receptor Trigger Conformational Changes Associated with Cell Entry. J.Virol. (2015)

Release Date

2015-02-11

Peptides

Capsid protein VP1: A
Capsid protein VP2: B
Capsid protein VP3: C
Capsid protein VP4: D
Poliovirus receptor: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

D
4

E
7

Capsid protein VP1

Capsid protein VP2

Capsid protein VP3

Capsid protein VP4

Poliovirus receptor

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