- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.70 Å
- Oligo State
- hetero-6-6-6-6-6-mer
- Ligands
- 12 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 6 x NAG- NAG- BMA- BMA- FUC: beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-BMA-FUC.2: 3 residues within 4Å:- Chain E: G.119, N.120, W.138
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:N.120
NAG-NAG-BMA-BMA-FUC.9: 3 residues within 4Å:- Chain J: G.119, N.120, W.138
1 PLIP interactions:1 interactions with chain J- Hydrogen bonds: J:N.120
NAG-NAG-BMA-BMA-FUC.16: 3 residues within 4Å:- Chain O: G.119, N.120, W.138
1 PLIP interactions:1 interactions with chain O- Hydrogen bonds: O:N.120
NAG-NAG-BMA-BMA-FUC.23: 3 residues within 4Å:- Chain T: G.119, N.120, W.138
1 PLIP interactions:1 interactions with chain T- Hydrogen bonds: T:N.120
NAG-NAG-BMA-BMA-FUC.30: 3 residues within 4Å:- Chain Y: G.119, N.120, W.138
1 PLIP interactions:1 interactions with chain Y- Hydrogen bonds: Y:N.120
NAG-NAG-BMA-BMA-FUC.37: 3 residues within 4Å:- Chain 3: G.119, N.120, W.138
1 PLIP interactions:1 interactions with chain 3- Hydrogen bonds: 3:N.120
- 12 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.3: 1 residues within 4Å:- Chain E: N.188
No protein-ligand interaction detected (PLIP)NAG-NAG.4: 2 residues within 4Å:- Chain E: N.218
- Ligands: NAG-NAG-BMA.5
No protein-ligand interaction detected (PLIP)NAG-NAG.10: 1 residues within 4Å:- Chain J: N.188
No protein-ligand interaction detected (PLIP)NAG-NAG.11: 2 residues within 4Å:- Chain J: N.218
- Ligands: NAG-NAG-BMA.12
No protein-ligand interaction detected (PLIP)NAG-NAG.17: 1 residues within 4Å:- Chain O: N.188
No protein-ligand interaction detected (PLIP)NAG-NAG.18: 2 residues within 4Å:- Chain O: N.218
- Ligands: NAG-NAG-BMA.19
No protein-ligand interaction detected (PLIP)NAG-NAG.24: 1 residues within 4Å:- Chain T: N.188
No protein-ligand interaction detected (PLIP)NAG-NAG.25: 2 residues within 4Å:- Chain T: N.218
- Ligands: NAG-NAG-BMA.26
No protein-ligand interaction detected (PLIP)NAG-NAG.31: 1 residues within 4Å:- Chain Y: N.188
No protein-ligand interaction detected (PLIP)NAG-NAG.32: 2 residues within 4Å:- Chain Y: N.218
- Ligands: NAG-NAG-BMA.33
No protein-ligand interaction detected (PLIP)NAG-NAG.38: 1 residues within 4Å:- Chain 3: N.188
No protein-ligand interaction detected (PLIP)NAG-NAG.39: 2 residues within 4Å:- Chain 3: N.218
- Ligands: NAG-NAG-BMA.40
No protein-ligand interaction detected (PLIP)- 6 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-FUC.6: 3 residues within 4Å:- Chain E: P.305, I.306, N.307
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-FUC.13: 3 residues within 4Å:- Chain J: P.305, I.306, N.307
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-FUC.20: 3 residues within 4Å:- Chain O: P.305, I.306, N.307
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-FUC.27: 3 residues within 4Å:- Chain T: P.305, I.306, N.307
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-FUC.34: 3 residues within 4Å:- Chain Y: P.305, I.306, N.307
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-FUC.41: 3 residues within 4Å:- Chain 3: P.305, I.306, N.307
No protein-ligand interaction detected (PLIP)- 6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.7: 3 residues within 4Å:- Chain E: N.313, T.315, Q.322
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:N.313, E:T.315
NAG.14: 3 residues within 4Å:- Chain J: N.313, T.315, Q.322
2 PLIP interactions:2 interactions with chain J- Hydrogen bonds: J:N.313, J:T.315
NAG.21: 3 residues within 4Å:- Chain O: N.313, T.315, Q.322
2 PLIP interactions:2 interactions with chain O- Hydrogen bonds: O:N.313, O:T.315
NAG.28: 3 residues within 4Å:- Chain T: N.313, T.315, Q.322
2 PLIP interactions:2 interactions with chain T- Hydrogen bonds: T:N.313, T:T.315
NAG.35: 3 residues within 4Å:- Chain Y: N.313, T.315, Q.322
1 PLIP interactions:1 interactions with chain Y- Hydrogen bonds: Y:N.313
NAG.42: 3 residues within 4Å:- Chain 3: N.313, T.315, Q.322
2 PLIP interactions:2 interactions with chain 3- Hydrogen bonds: 3:N.313, 3:T.315
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Strauss, M. et al., Nectin-Like Interactions between Poliovirus and Its Receptor Trigger Conformational Changes Associated with Cell Entry. J.Virol. (2015)
- Release Date
- 2015-02-11
- Peptides
- Capsid protein VP1: AFKPUZ
Capsid protein VP2: BGLQV0
Capsid protein VP3: CHMRW1
Capsid protein VP4: DINSX2
Poliovirus receptor: EJOTY3 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
1F
1K
1P
1U
1Z
1B
2G
2L
2Q
2V
20
2C
3H
3M
3R
3W
31
3D
4I
4N
4S
4X
42
4E
7J
7O
7T
7Y
73
7
SMTL ID : 3j8f.3 (3 other biounits)
Cryo-EM reconstruction of poliovirus-receptor complex
Capsid protein VP1
Toggle Identical (AFKPUZ)Capsid protein VP2
Toggle Identical (BGLQV0)Capsid protein VP3
Toggle Identical (CHMRW1)Capsid protein VP4
Toggle Identical (DINSX2)Poliovirus receptor
Toggle Identical (EJOTY3)Related Entries With Identical Sequence
1al2.1 | 1al2.2 | 1al2.3 | 1al2.4 | 1ar6.1 | 1ar6.2 | 1ar6.3 | 1ar6.4 | 1ar7.1 | 1ar7.2 | 1ar7.3 | 1ar7.4 | 1ar8.1 | 1ar8.2 | 1ar8.3 | 1ar8.4 | 1ar9.1 | 1ar9.2 | 1ar9.3 | 1ar9.4 | 1asj.1 | 1asj.2 | 1asj.3 | 1asj.4 | 1hxs.1 | 1hxs.2 | 1hxs.3 | 1hxs.4 | 1po1.1 | 1po1.2 more...less...1po1.3 | 1po1.4 | 1po2.1 | 1po2.2 | 1po2.3 | 1po2.4 | 1pov.1 | 1pov.2 | 1pov.3 | 1pov.4 | 1vbd.1 | 1vbd.2 | 1vbd.3 | 1vbd.4 | 2plv.1 | 2plv.2 | 2plv.3 | 2plv.4 | 3j8f.1 | 3j8f.2 | 3j8f.4 | 3j9f.1 | 3j9f.2 | 3j9f.3 | 3j9f.4 | 3jbc.1 | 3jbc.2 | 3jbc.3 | 3jbc.4 | 3jbd.1 | 3jbd.2 | 3jbd.3 | 3jbd.4 | 3jbe.1 | 3jbe.2 | 3jbe.3 | 3jbe.4 | 3jbf.1 | 3jbf.2 | 3jbf.3 | 3jbf.4 | 3jbg.1 | 3jbg.2 | 3jbg.3 | 3jbg.4 | 6p9o.1 | 6p9o.2 | 6p9o.3 | 6p9o.4 | 6p9w.1 | 6p9w.2 | 6p9w.3 | 6p9w.4 | 6psz.1 | 6psz.2 | 6psz.3 | 6psz.4 | 6q0b.1 | 6q0b.2 | 6q0b.3 | 6q0b.4