SMTL ID : 1ar8.3 (3 other biounits)

P1/MAHONEY POLIOVIRUS, MUTANT P1095S

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x ALA- ALA- ALA- ALA- SER- SER- SER- THR: P1/MAHONEY POLIOVIRUS(Non-covalent)

ALA-ALA-ALA-ALA-SER-SER-SER-THR.1: 8 residues within 4Å: Chain D: G.1, A.2, Q.3, V.4, S.5, S.6 Ligands: ALA-ALA-ALA-ALA-SER-SER-SER-THR.4, ALA-ALA-ALA-ALA-SER-SER-SER-THR.4 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:A.2, D:Q.3, D:V.4, D:V.4, D:S.5, D:S.6 ALA-ALA-ALA-ALA-SER-SER-SER-THR.4: 7 residues within 4Å: Chain H: G.1, A.2, Q.3, V.4, S.5, S.6 Ligands: ALA-ALA-ALA-ALA-SER-SER-SER-THR.1 6 PLIP interactions: 6 interactions with chain H Hydrogen bonds: H:A.2, H:Q.3, H:V.4, H:V.4, H:S.6, H:Q.43 ALA-ALA-ALA-ALA-SER-SER-SER-THR.7: 7 residues within 4Å: Chain L: G.1, A.2, Q.3, V.4, S.5, S.6 Ligands: ALA-ALA-ALA-ALA-SER-SER-SER-THR.10 6 PLIP interactions: 6 interactions with chain L Hydrogen bonds: L:A.2, L:Q.3, L:V.4, L:V.4, L:S.5, L:S.6 ALA-ALA-ALA-ALA-SER-SER-SER-THR.10: 8 residues within 4Å: Chain P: G.1, A.2, Q.3, V.4, S.5, S.6 Ligands: ALA-ALA-ALA-ALA-SER-SER-SER-THR.7, ALA-ALA-ALA-ALA-SER-SER-SER-THR.7 6 PLIP interactions: 6 interactions with chain P Hydrogen bonds: P:A.2, P:Q.3, P:V.4, P:V.4, P:S.5, P:S.6 ALA-ALA-ALA-ALA-SER-SER-SER-THR.13: 8 residues within 4Å: Chain T: G.1, A.2, Q.3, V.4, S.5, S.6 Ligands: ALA-ALA-ALA-ALA-SER-SER-SER-THR.16, ALA-ALA-ALA-ALA-SER-SER-SER-THR.16 6 PLIP interactions: 6 interactions with chain T Hydrogen bonds: T:A.2, T:Q.3, T:V.4, T:V.4, T:S.5, T:S.6 ALA-ALA-ALA-ALA-SER-SER-SER-THR.16: 7 residues within 4Å: Chain X: G.1, A.2, Q.3, V.4, S.5, S.6 Ligands: ALA-ALA-ALA-ALA-SER-SER-SER-THR.13 6 PLIP interactions: 6 interactions with chain X Hydrogen bonds: X:A.2, X:Q.3, X:V.4, X:V.4, X:S.6, X:Q.43

6 x SPH: SPHINGOSINE(Non-covalent)

SPH.2: 14 residues within 4Å: Chain A: I.110, Y.112, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, D.236, F.237 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.110, A:Y.112, A:Y.112, A:L.134, A:Y.159, A:Y.159, A:Y.159, A:I.183, A:I.194, A:V.196, A:V.196, A:V.199, A:Y.205, A:F.237, A:F.237, A:F.237, A:F.237 Hydrogen bonds: A:S.206 Water bridges: A:S.206 SPH.5: 14 residues within 4Å: Chain E: I.110, Y.112, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, D.236, F.237 19 PLIP interactions: 19 interactions with chain E Hydrophobic interactions: E:I.110, E:Y.112, E:Y.112, E:L.134, E:Y.159, E:Y.159, E:Y.159, E:I.183, E:I.194, E:V.196, E:V.196, E:V.199, E:Y.205, E:F.237, E:F.237, E:F.237, E:F.237 Hydrogen bonds: E:S.206 Water bridges: E:S.206 SPH.8: 14 residues within 4Å: Chain I: I.110, Y.112, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, D.236, F.237 19 PLIP interactions: 19 interactions with chain I Hydrophobic interactions: I:I.110, I:Y.112, I:Y.112, I:L.134, I:Y.159, I:Y.159, I:Y.159, I:I.183, I:I.194, I:V.196, I:V.196, I:V.199, I:Y.205, I:F.237, I:F.237, I:F.237, I:F.237 Hydrogen bonds: I:S.206 Water bridges: I:S.206 SPH.11: 14 residues within 4Å: Chain M: I.110, Y.112, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, D.236, F.237 19 PLIP interactions: 19 interactions with chain M Hydrophobic interactions: M:I.110, M:Y.112, M:Y.112, M:L.134, M:Y.159, M:Y.159, M:Y.159, M:I.183, M:I.194, M:V.196, M:V.196, M:V.199, M:Y.205, M:F.237, M:F.237, M:F.237, M:F.237 Hydrogen bonds: M:S.206 Water bridges: M:S.206 SPH.14: 14 residues within 4Å: Chain Q: I.110, Y.112, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, D.236, F.237 19 PLIP interactions: 19 interactions with chain Q Hydrophobic interactions: Q:I.110, Q:Y.112, Q:Y.112, Q:L.134, Q:Y.159, Q:Y.159, Q:Y.159, Q:I.183, Q:I.194, Q:V.196, Q:V.196, Q:V.199, Q:Y.205, Q:F.237, Q:F.237, Q:F.237, Q:F.237 Hydrogen bonds: Q:S.206 Water bridges: Q:S.206 SPH.17: 14 residues within 4Å: Chain U: I.110, Y.112, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, D.236, F.237 19 PLIP interactions: 19 interactions with chain U Hydrophobic interactions: U:I.110, U:Y.112, U:Y.112, U:L.134, U:Y.159, U:Y.159, U:Y.159, U:I.183, U:I.194, U:V.196, U:V.196, U:V.199, U:Y.205, U:F.237, U:F.237, U:F.237, U:F.237 Hydrogen bonds: U:S.206 Water bridges: U:S.206

6 x MYR: MYRISTIC ACID(Covalent)

MYR.3: 8 residues within 4Å: Chain D: G.1, A.2, I.29, Y.31 Chain H: V.4, T.27, I.29, Y.31 5 PLIP interactions: 2 interactions with chain H, 3 interactions with chain D Hydrophobic interactions: H:I.29, D:I.29, D:Y.31, D:Y.31 Hydrogen bonds: H:T.27 MYR.6: 4 residues within 4Å: Chain H: G.1, A.2, I.29, Y.31 3 PLIP interactions: 3 interactions with chain H Hydrophobic interactions: H:I.29, H:Y.31, H:Y.31 MYR.9: 4 residues within 4Å: Chain L: G.1, A.2, I.29, Y.31 3 PLIP interactions: 3 interactions with chain L Hydrophobic interactions: L:I.29, L:Y.31, L:Y.31 MYR.12: 8 residues within 4Å: Chain L: V.4, T.27, I.29, Y.31 Chain P: G.1, A.2, I.29, Y.31 5 PLIP interactions: 2 interactions with chain L, 3 interactions with chain P Hydrophobic interactions: L:I.29, P:I.29, P:Y.31, P:Y.31 Hydrogen bonds: L:T.27 MYR.15: 8 residues within 4Å: Chain T: G.1, A.2, I.29, Y.31 Chain X: V.4, T.27, I.29, Y.31 5 PLIP interactions: 3 interactions with chain T, 2 interactions with chain X Hydrophobic interactions: T:I.29, T:Y.31, T:Y.31, X:I.29 Hydrogen bonds: X:T.27 MYR.18: 4 residues within 4Å: Chain X: G.1, A.2, I.29, Y.31 3 PLIP interactions: 3 interactions with chain X Hydrophobic interactions: X:I.29, X:Y.31, X:Y.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wien, M.W. et al., Structural studies of poliovirus mutants that overcome receptor defects. Nat.Struct.Biol. (1997)

Release Date

1997-12-03

Peptides

P1/MAHONEY POLIOVIRUS: AEIMQU
P1/MAHONEY POLIOVIRUS: BFJNRV
P1/MAHONEY POLIOVIRUS: CGKOSW
P1/MAHONEY POLIOVIRUS: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

U
1

B
2

F
2

J
2

N
2

R
2

V
2

C
3

G
3

K
3

O
3

S
3

W
3

D
4

H
4

L
4

P
4

T
4

X
4

P1/MAHONEY POLIOVIRUS

P1/MAHONEY POLIOVIRUS

P1/MAHONEY POLIOVIRUS

P1/MAHONEY POLIOVIRUS

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