- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-5-5-5-5-5-5-5-mer
- Ligands
- 10 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)
- 5 x NAG- NAG- BMA- MAN- FUC: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-MAN-FUC.2: 4 residues within 4Å:- Chain E: E.91, G.92, N.93, W.111
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-FUC.10: 4 residues within 4Å:- Chain L: E.91, G.92, N.93, W.111
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-FUC.18: 4 residues within 4Å:- Chain S: E.91, G.92, N.93, W.111
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-FUC.26: 4 residues within 4Å:- Chain Z: E.91, G.92, N.93, W.111
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-MAN-FUC.34: 4 residues within 4Å:- Chain 6: E.91, G.92, N.93, W.111
No protein-ligand interaction detected (PLIP)- 10 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.3: 1 residues within 4Å:- Chain F: N.47
No protein-ligand interaction detected (PLIP)NAG-NAG.4: 3 residues within 4Å:- Chain F: N.77, T.94
- Ligands: NAG-NAG-BMA.5
No protein-ligand interaction detected (PLIP)NAG-NAG.11: 1 residues within 4Å:- Chain M: N.47
No protein-ligand interaction detected (PLIP)NAG-NAG.12: 3 residues within 4Å:- Chain M: N.77, T.94
- Ligands: NAG-NAG-BMA.13
No protein-ligand interaction detected (PLIP)NAG-NAG.19: 1 residues within 4Å:- Chain T: N.47
No protein-ligand interaction detected (PLIP)NAG-NAG.20: 3 residues within 4Å:- Chain T: N.77, T.94
- Ligands: NAG-NAG-BMA.21
No protein-ligand interaction detected (PLIP)NAG-NAG.27: 1 residues within 4Å:- Chain 0: N.47
No protein-ligand interaction detected (PLIP)NAG-NAG.28: 3 residues within 4Å:- Chain 0: N.77, T.94
- Ligands: NAG-NAG-BMA.29
No protein-ligand interaction detected (PLIP)NAG-NAG.35: 1 residues within 4Å:- Chain 7: N.47
No protein-ligand interaction detected (PLIP)NAG-NAG.36: 3 residues within 4Å:- Chain 7: N.77, T.94
- Ligands: NAG-NAG-BMA.37
No protein-ligand interaction detected (PLIP)- 5 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA-FUC.6: 2 residues within 4Å:- Chain G: P.64, N.66
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-FUC.14: 2 residues within 4Å:- Chain N: P.64, N.66
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-FUC.22: 2 residues within 4Å:- Chain U: P.64, N.66
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-FUC.30: 2 residues within 4Å:- Chain 1: P.64, N.66
No protein-ligand interaction detected (PLIP)NAG-NAG-BMA-FUC.38: 2 residues within 4Å:- Chain 8: P.64, N.66
No protein-ligand interaction detected (PLIP)- 5 x PLM: PALMITIC ACID(Non-covalent)
PLM.7: 15 residues within 4Å:- Chain A: I.110, Y.112, F.130, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, N.235, F.237
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:I.110, A:Y.112, A:F.130, A:L.134, A:Y.159, A:Y.159, A:Y.159, A:I.183, A:V.196, A:V.199, A:Y.205, A:F.237, A:F.237
- Hydrogen bonds: A:Y.112
PLM.15: 15 residues within 4Å:- Chain H: I.110, Y.112, F.130, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, N.235, F.237
14 PLIP interactions:14 interactions with chain H- Hydrophobic interactions: H:I.110, H:Y.112, H:F.130, H:L.134, H:Y.159, H:Y.159, H:Y.159, H:I.183, H:V.196, H:V.199, H:Y.205, H:F.237, H:F.237
- Hydrogen bonds: H:Y.112
PLM.23: 15 residues within 4Å:- Chain O: I.110, Y.112, F.130, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, N.235, F.237
14 PLIP interactions:14 interactions with chain O- Hydrophobic interactions: O:I.110, O:Y.112, O:F.130, O:L.134, O:Y.159, O:Y.159, O:Y.159, O:I.183, O:V.196, O:V.199, O:Y.205, O:F.237, O:F.237
- Hydrogen bonds: O:Y.112
PLM.31: 15 residues within 4Å:- Chain V: I.110, Y.112, F.130, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, N.235, F.237
14 PLIP interactions:14 interactions with chain V- Hydrophobic interactions: V:I.110, V:Y.112, V:F.130, V:L.134, V:Y.159, V:Y.159, V:Y.159, V:I.183, V:V.196, V:V.199, V:Y.205, V:F.237, V:F.237
- Hydrogen bonds: V:Y.112
PLM.39: 15 residues within 4Å:- Chain 2: I.110, Y.112, F.130, M.132, L.134, Y.159, P.181, I.183, I.194, V.196, V.199, Y.205, S.206, N.235, F.237
14 PLIP interactions:14 interactions with chain 2- Hydrophobic interactions: 2:I.110, 2:Y.112, 2:F.130, 2:L.134, 2:Y.159, 2:Y.159, 2:Y.159, 2:I.183, 2:V.196, 2:V.199, 2:Y.205, 2:F.237, 2:F.237
- Hydrogen bonds: 2:Y.112
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.8: 3 residues within 4Å:- Chain G: N.72, T.74, Q.81
No protein-ligand interaction detected (PLIP)NAG.16: 3 residues within 4Å:- Chain N: N.72, T.74, Q.81
No protein-ligand interaction detected (PLIP)NAG.24: 3 residues within 4Å:- Chain U: N.72, T.74, Q.81
No protein-ligand interaction detected (PLIP)NAG.32: 3 residues within 4Å:- Chain 1: N.72, T.74, Q.81
No protein-ligand interaction detected (PLIP)NAG.40: 3 residues within 4Å:- Chain 8: N.72, T.74, Q.81
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Strauss, M. et al., Nectin-Like Interactions between Poliovirus and Its Receptor Trigger Conformational Changes Associated with Cell Entry. J.Virol. (2015)
- Release Date
- 2015-02-11
- Peptides
- Protein VP1: AHOV2
Protein VP2: BIPW3
Protein VP3: CJQX4
Protein VP4: DKRY5
Poliovirus receptor: ELSZ6
Poliovirus receptor: FMT07
Poliovirus receptor: GNU18 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
1H
1O
1V
12
1B
2I
2P
2W
23
2C
3J
3Q
3X
34
3D
4K
4R
4Y
45
4E
7L
7S
7Z
76
7F
8M
8T
80
87
8G
9N
9U
91
98
9
SMTL ID : 3j9f.2 (3 other biounits)
Poliovirus complexed with soluble, deglycosylated poliovirus receptor (Pvr) at 4 degrees C
Protein VP1
Toggle Identical (AHOV2)Protein VP2
Toggle Identical (BIPW3)Protein VP3
Toggle Identical (CJQX4)Protein VP4
Toggle Identical (DKRY5)Poliovirus receptor
Toggle Identical (ELSZ6)Poliovirus receptor
Toggle Identical (FMT07)Poliovirus receptor
Toggle Identical (GNU18)Related Entries With Identical Sequence
1al2.1 | 1al2.2 | 1al2.3 | 1al2.4 | 1ar6.1 | 1ar6.2 | 1ar6.3 | 1ar6.4 | 1ar7.1 | 1ar7.2 | 1ar7.3 | 1ar7.4 | 1ar8.1 | 1ar8.2 | 1ar8.3 | 1ar8.4 | 1ar9.1 | 1ar9.2 | 1ar9.3 | 1ar9.4 | 1asj.1 | 1asj.2 | 1asj.3 | 1asj.4 | 1hxs.1 | 1hxs.2 | 1hxs.3 | 1hxs.4 | 1po1.1 | 1po1.2 more...less...1po1.3 | 1po1.4 | 1po2.1 | 1po2.2 | 1po2.3 | 1po2.4 | 1pov.1 | 1pov.2 | 1pov.3 | 1pov.4 | 1vbd.1 | 1vbd.2 | 1vbd.3 | 1vbd.4 | 2plv.1 | 2plv.2 | 2plv.3 | 2plv.4 | 3j8f.1 | 3j8f.2 | 3j8f.3 | 3j8f.4 | 3j9f.1 | 3j9f.3 | 3j9f.4 | 3jbc.1 | 3jbc.2 | 3jbc.3 | 3jbc.4 | 3jbd.1 | 3jbd.2 | 3jbd.3 | 3jbd.4 | 3jbe.1 | 3jbe.2 | 3jbe.3 | 3jbe.4 | 3jbf.1 | 3jbf.2 | 3jbf.3 | 3jbf.4 | 3jbg.1 | 3jbg.2 | 3jbg.3 | 3jbg.4 | 6p9o.1 | 6p9o.2 | 6p9o.3 | 6p9o.4 | 6p9w.1 | 6p9w.2 | 6p9w.3 | 6p9w.4 | 6psz.1 | 6psz.2 | 6psz.3 | 6psz.4 | 6q0b.1 | 6q0b.2 | 6q0b.3 | 6q0b.4