SMTL ID : 8ze7.1

Crystal Structure of Concanavalin A Complexed with Lysine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

1 x LYS: LYSINE(Non-covalent)

LYS.1: 5 residues within 4Å: Chain A: K.138, L.140, I.141, L.142, Y.176 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:I.141, A:Y.176 Hydrogen bonds: A:K.138, A:L.140, A:L.142

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: A.1, P.222, S.223, P.234 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.1, A:S.223, A:S.223 Water bridges: A:D.2

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: D.10, Y.12, N.14, D.19 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.10, A:Y.12, A:D.19, H2O.1, H2O.2

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.4: 4 residues within 4Å: Chain A: E.8, D.10, D.19, H.24 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.8, A:D.10, A:D.19, A:H.24, H2O.1, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rasheed, S. et al., Crystal Structure of Concanavalin A Complexed with Lysine. To Be Published

Release Date

2025-05-07

Peptides

Concanavalin-Br: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Concanavalin-Br

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