- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.87 Å
- Oligo State
- hetero-oligomer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.3: 18 residues within 4Å:- Chain A: T.39, Y.42, F.43, H.45, F.46, H.58, K.61, A.65, L.66, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, L.136
18 PLIP interactions:18 interactions with chain A,- Hydrophobic interactions: A:Y.42, A:F.43, A:F.43, A:K.61, A:A.65, A:L.83, A:L.86, A:L.91, A:L.91, A:V.93, A:V.93, A:F.98, A:L.101, A:L.136
- Salt bridges: A:H.45, A:K.61
- pi-Stacking: A:H.58
- Metal complexes: A:H.87
HEM.4: 18 residues within 4Å:- Chain B: L.31, F.41, F.42, H.63, K.66, V.67, A.70, F.71, F.85, L.88, L.91, H.92, L.96, V.98, N.102, F.103, L.106, L.141
19 PLIP interactions:19 interactions with chain B,- Hydrophobic interactions: B:F.41, B:F.41, B:F.42, B:F.42, B:K.66, B:V.67, B:F.71, B:F.85, B:L.88, B:L.91, B:L.96, B:L.96, B:V.98, B:V.98, B:F.103, B:L.141
- Salt bridges: B:K.66
- pi-Stacking: B:H.63
- Metal complexes: B:H.92
HEM.5: 17 residues within 4Å:- Chain C: T.39, Y.42, F.43, H.45, F.46, H.58, K.61, A.65, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, L.136
18 PLIP interactions:18 interactions with chain C,- Hydrophobic interactions: C:Y.42, C:F.43, C:K.61, C:K.61, C:A.65, C:L.86, C:L.91, C:L.91, C:V.93, C:V.93, C:F.98, C:F.98, C:L.101, C:L.136
- Salt bridges: C:H.45, C:K.61
- pi-Stacking: C:H.58
- Metal complexes: C:H.87
HEM.6: 15 residues within 4Å:- Chain D: L.31, F.41, F.42, H.63, K.66, V.67, A.70, L.88, H.92, L.96, V.98, N.102, F.103, L.106, L.141
17 PLIP interactions:17 interactions with chain D,- Hydrophobic interactions: D:L.31, D:F.41, D:F.41, D:F.42, D:F.42, D:V.67, D:L.88, D:L.96, D:L.96, D:V.98, D:V.98, D:F.103, D:L.106, D:L.141
- Salt bridges: D:K.66
- pi-Stacking: D:H.63
- Metal complexes: D:H.92
- 2 x CNO: 2-{4-[(3{2-[4-(1-CARBOXY-1-METHYL-ETHOXY)-PHENYL]-ACETYLAMINO}-PHENYLCARBAMOYL)-METHYL]-PHENOXY}-2-METHYL-PROPIONIC ACID(Non-covalent)
CNO.7: 16 residues within 4Å:- Chain A: T.38, V.96, K.99, L.100, H.103
- Chain B: Y.35, W.37, R.104, N.108
- Chain C: P.95, T.137, R.141
- Chain D: D.99, P.100, E.101, R.104
18 PLIP interactions:5 interactions with chain B, 3 interactions with chain C, 7 interactions with chain A, 3 interactions with chain D- Hydrophobic interactions: B:Y.35, C:P.95, A:V.96, A:L.100, A:L.100, A:H.103, D:E.101
- Water bridges: B:Y.35, B:Y.35, B:Y.35, B:N.108, C:R.141, C:R.141, A:K.99
- Hydrogen bonds: A:T.38, D:R.104
- pi-Cation interactions: A:K.99
- Salt bridges: D:R.104
CNO.8: 14 residues within 4Å:- Chain A: P.95, T.137, R.141
- Chain B: D.99, P.100, E.101, R.104
- Chain C: T.38, K.99, L.100, H.103
- Chain D: Y.35, W.37, N.108
17 PLIP interactions:6 interactions with chain D, 2 interactions with chain B, 5 interactions with chain C, 4 interactions with chain A- Hydrophobic interactions: D:Y.35, D:W.37, D:W.37, C:T.38, C:L.100, C:L.100, C:H.103, A:P.95, A:R.141
- Water bridges: D:Y.35, D:N.108, D:N.108, A:R.141
- Hydrogen bonds: B:E.101, B:R.104
- pi-Cation interactions: C:K.99
- Salt bridges: A:R.141
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Safo, M.K. et al., X-ray crystallographic analyses of symmetrical allosteric effectors of hemoglobin: compounds designed to link primary and secondary binding sites. Acta Crystallogr.,Sect.D (2002)
- Release Date
- 2001-10-03
- Peptides
- hemoglobin alpha chain: AC
hemoglobin beta chain: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
D
SMTL ID : 1k0y.1
X-ray Crystallographic Analyses of Symmetrical Allosteric Effectors of Hemoglobin. Compounds Designed to Link Primary and Secondary Binding Sites
hemoglobin alpha chain
Toggle Identical (AC)hemoglobin beta chain
Toggle Identical (BD)Related Entries With Identical Sequence
1a00.1 | 1a01.1 | 1a0u.1 | 1a0z.1 | 1a3n.1 | 1a3o.1 | 1a9w.1 | 1aj9.1 | 1b86.1 | 1bab.1 | 1bbb.1 | 1bij.1 | 1buw.1 | 1bz0.1 | 1bz1.1 | 1bzz.1 | 1cbl.1 | 1cbm.1 | 1cls.1 | 1cmy.1 | 1coh.1 | 1dke.1 | 1dxt.1 | 1dxu.1 | 1dxv.1 | 1fdh.1 | 1fn3.1 | 1g9v.1 | 1gbu.1 | 1gbv.1 more...less...1gzx.1 | 1hab.1 | 1hac.1 | 1hba.1 | 1hbb.1 | 1hbs.1 | 1hbs.2 | 1hco.1 | 1hdb.1 | 1hga.1 | 1hgb.1 | 1hgc.1 | 1hho.1 | 1ird.1 | 1j3y.1 | 1j3y.2 | 1j3z.1 | 1j3z.2 | 1j40.1 | 1j40.2 | 1j41.1 | 1j41.2 | 1jy7.1 | 1jy7.2 | 1jy7.3 | 1k1k.1 | 1kd2.1 | 1lfl.1 | 1lfl.2 | 1lfq.1 | 1lft.1 | 1lfv.1 | 1lfy.1 | 1lfz.1 | 1ljw.1 | 1m9p.1 | 1mko.1 | 1nej.1 | 1nih.1 | 1nqp.1 | 1qsh.1 | 1qsi.1 | 1qxd.1 | 1qxd.2 | 1qxe.1 | 1qxe.2 | 1qxe.3 | 1r1x.1 | 1r1y.1 | 1rps.1 | 1rq3.1 | 1rq4.1 | 1rqa.1 | 1rvw.1 | 1sdk.1 | 1sdk.2 | 1sdl.1 | 1sdl.2 | 1shr.1 | 1si4.1 | 1thb.1 | 1uiw.1 | 1uiw.2 | 1vwt.1 | 1xxt.1 | 1xy0.1 | 1xye.1 | 1xz2.1 | 1xz4.1 | 1xz5.1 | 1xz7.1 | 1xzu.1 | 1xzv.1 | 1y09.1 | 1y0a.1 | 1y0c.1 | 1y0d.1 | 1y0t.1 | 1y0w.1 | 1y22.1 | 1y2z.1 | 1y31.1 | 1y35.1 | 1y45.1 | 1y46.1 | 1y4b.1 | 1y4f.1 | 1y4g.1 | 1y4p.1 | 1y4q.1 | 1y4r.1 | 1y4v.1 | 1y5f.1 | 1y5j.1 | 1y5k.1 | 1y7c.1 | 1y7d.1 | 1y7g.1 | 1y7z.1 | 1y83.1 | 1y85.1 | 1y8w.1 | 1ydz.1 | 1ye0.1 | 1ye1.1 | 1ye2.1 | 1yen.1 | 1yeo.1 | 1yeq.1 | 1yeu.1 | 1yev.1 | 1yff.1 | 1yff.2 | 1yg5.1 | 1ygd.1 | 1ygf.1 | 1yh9.1 | 1yhe.1 | 1yhr.1 | 1yie.1 | 1yih.1 | 1yvq.1 | 1yvt.1 | 1yzi.1 | 2d5z.1 | 2d60.1 | 2dn1.1 | 2dn2.1 | 2dn3.1 | 2dxm.1 | 2h35.1 | 2hbc.1 | 2hbd.1 | 2hbe.1 | 2hbf.1 | 2hbs.1 | 2hbs.2 | 2hco.1 | 2hhb.1 | 2hhd.1 | 2hhe.1 | 2m6z.1 | 2w6v.1 | 2yrs.1 | 2yrs.2 | 3b75.1 | 3b75.2 | 3b75.3 | 3d17.1 | 3d7o.1 | 3dut.1 | 3hhb.1 | 3hxn.1 | 3ic0.1 | 3ic2.1 | 3kmf.1 | 3nl7.1 | 3nmm.1 | 3odq.1 | 3onz.1 | 3oo4.1 | 3oo5.1 | 3ovu.1 | 3p5q.1 | 3qjb.1 | 3qjc.1 | 3qjd.1 | 3qje.1 | 3r5i.1 | 3s48.1 | 3s48.2 | 3s65.1 | 3s66.1 | 3szk.1 | 3szk.2 | 3wcp.1 | 3whm.1 | 4fc3.1 | 4hhb.1 | 4ij2.1 | 4l7y.1 | 4m4a.1 | 4m4b.1 | 4mqc.1 | 4mqg.1 | 4mqh.1 | 4mqj.1 | 4mqj.2 | 4mqk.1 | 4mqk.2 | 4n7n.1 | 4n7n.2 | 4n7n.3 | 4n7o.1 | 4n7o.2 | 4n7o.3 | 4n7p.1 | 4n7p.2 | 4n7p.3 | 4n8t.1 | 4ni0.1 | 4ni1.1 | 4rol.1 | 4rom.1 | 4wjg.1 | 4wjg.2 | 4wjg.3 | 4x0l.1 | 4xs0.1 | 5e29.1 | 5e6e.1 | 5e83.1 | 5ee4.1 | 5ee4.2 | 5hu6.1 | 5hy8.1 | 5hy8.2 | 5hy8.3 | 5jdo.1 | 5kdq.1 | 5ksi.1 | 5ksj.1 | 5ni1.1 | 5u3i.1 | 5ucu.1 | 5ufj.1 | 5urc.1 | 5vmm.1 | 5wog.1 | 5woh.1 | 5x2r.1 | 5x2r.2 | 5x2r.3 | 5x2s.1 | 5x2s.2 | 5x2s.3 | 5x2t.1 | 5x2t.2 | 5x2t.3 | 5x2u.1 | 5x2u.2 | 5x2u.3 | 6bnr.1 | 6bwp.1 | 6bwu.1 | 6di4.1 | 6fqf.1 | 6hbw.1 | 6hk2.1 | 6ka9.1 | 6ka9.2 | 6kae.1 | 6kae.2 | 6kah.1 | 6kah.2 | 6kai.1 | 6kai.2 | 6kao.1 | 6kap.1 | 6kaq.1 | 6kar.1 | 6kas.1 | 6kat.1 | 6kau.1 | 6kav.1 | 6l5v.1 | 6l5w.1 | 6l5x.1 | 6l5y.1 | 6lcw.1 | 6lcw.2 | 6lcx.1 | 6lcx.2 | 6nq5.1 | 6tb2.1 | 6xd9.1 | 6xdt.1 | 6xe7.1 | 7dy3.1 | 7dy3.2 | 7dy4.1 | 7dy4.2 | 7jjq.1 | 7jxz.1 | 7jy0.1 | 7jy1.1 | 7jy3.1 | 7pcf.1 | 7pch.1 | 7pcq.1 | 7uvb.1 | 8dov.1 | 8dov.2