SMTL ID : 1tz8.1 (2 other biounits)

The monoclinic crystal structure of transthyretin in complex with diethylstilbestrol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 2 residues within 4Å: Chain A: W.41 Chain C: E.72 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:H.90 ACT.5: 2 residues within 4Å: Chain A: E.72 Chain C: W.41 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.90

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 4 residues within 4Å: Chain A: K.80, G.83, I.84, S.85 No protein-ligand interaction detected (PLIP) DMS.6: 4 residues within 4Å: Chain C: K.80, G.83, I.84, S.85 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 11 residues within 4Å: Chain A: S.112, S.115, S.117 Chain B: S.117 Chain C: S.117 Chain D: A.19, L.110, S.112, S.115, Y.116, S.117 6 PLIP interactions: 3 interactions with chain D, 1 interactions with chain C, 2 interactions with chain A Hydrogen bonds: D:S.112, D:S.112, D:Y.116, C:S.117, A:S.112, A:S.115 GOL.7: 11 residues within 4Å: Chain A: S.117 Chain B: A.19, L.110, S.112, S.115, Y.116, S.117 Chain C: S.112, S.115, S.117 Chain D: S.117 6 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B, 2 interactions with chain C Hydrogen bonds: A:S.117, B:S.112, B:S.112, B:Y.116, C:S.112, C:S.115

2 x DES: DIETHYLSTILBESTROL(Non-covalent)

DES.4: 13 residues within 4Å: Chain A: K.15, L.17, A.108, A.109, L.110, S.117 Chain B: K.15, L.17, A.108, A.109, L.110, S.117, T.119 14 PLIP interactions: 7 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:K.15, B:L.17, B:A.108, B:L.110, B:T.119, A:L.17, A:L.110, A:L.110 Hydrogen bonds: B:K.15, B:S.117, A:K.15, A:K.15, A:S.117, A:S.117 DES.8: 13 residues within 4Å: Chain C: K.15, L.17, A.108, A.109, L.110, S.117 Chain D: K.15, L.17, A.108, A.109, L.110, S.117, T.119 14 PLIP interactions: 7 interactions with chain C, 7 interactions with chain D Hydrophobic interactions: C:L.17, C:L.110, C:L.110, D:K.15, D:L.17, D:A.108, D:L.110, D:T.119 Hydrogen bonds: C:K.15, C:K.15, C:S.117, C:S.117, D:K.15, D:S.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morais-de-Sa, E.M. et al., The crystal structure of transthyretin in complex with diethylstilbestrol: a promising template for the design of amyloid inhibitors. J.Biol.Chem. (2004)

Release Date

2004-10-12

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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