SMTL ID : 5l4j.1

Crystal Structure of Human Transthyretin in Complex with 4,4'-Dihydroxydiphenyl sulfone (Bisphenol S, BPS)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

homo-tetramer

Ligands

4 x 6JD: 4-(4-hydroxyphenyl)sulfonylphenol(Non-covalent)

6JD.1: 15 residues within 4Å: Chain A: K.15, L.17, A.108, L.110, S.117, T.119 Chain C: K.15, L.17, T.106, A.108, L.110, S.117, T.119, V.121 Ligands: 6JD.4 8 PLIP interactions: 4 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:K.15, C:T.106, C:A.108, A:L.17, A:L.17, A:A.108 pi-Cation interactions: C:K.15 Hydrogen bonds: A:S.117 6JD.3: 14 residues within 4Å: Chain B: K.15, L.17, A.108, A.109, L.110, S.117 Chain D: K.15, L.17, T.106, A.108, L.110, S.117, V.121 Ligands: 6JD.6 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain D Hydrophobic interactions: B:K.15, B:L.17, B:A.108, D:K.15, D:L.17, D:T.106, D:A.108 pi-Cation interactions: D:K.15 6JD.4: 15 residues within 4Å: Chain A: K.15, L.17, T.106, A.108, L.110, S.117, T.119, V.121 Chain C: K.15, L.17, A.108, L.110, S.117, T.119 Ligands: 6JD.1 8 PLIP interactions: 4 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:L.17, C:L.17, C:A.108, A:K.15, A:T.106, A:A.108 Hydrogen bonds: C:S.117 pi-Cation interactions: A:K.15 6JD.6: 14 residues within 4Å: Chain B: K.15, L.17, T.106, A.108, L.110, S.117, V.121 Chain D: K.15, L.17, A.108, A.109, L.110, S.117 Ligands: 6JD.3 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:K.15, B:L.17, B:T.106, B:A.108, D:K.15, D:L.17, D:A.108 pi-Cation interactions: B:K.15

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Chain A: D.99 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.99 NA.5: 1 residues within 4Å: Chain C: D.99 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Structure-Based Virtual Screening Protocol for in Silico Identification of Potential Thyroid Disrupting Chemicals Targeting Transthyretin. Environ. Sci. Technol. (2016)

Release Date

2016-10-12

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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