SMTL ID : 2flm.1

Human transthyretin (TTR) complexed with bivalant amyloid inhibitor (6 carbon linker)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-tetramer

Ligands

2 x 6CA: 4'-{6-[4-(2-CARBOXYPHENYLAMINO)-PHENOXY]-HEXYLOXY}-BIPHENYL-4-CARBOXYLIC ACID(Non-covalent)

6CA.1: 24 residues within 4Å: Chain A: K.15, L.17, A.108, L.110, S.117, T.119 Chain B: K.15, L.17, A.108, L.110, S.117, T.119 Chain C: K.15, L.17, A.108, A.109, L.110, S.117 Chain D: K.15, L.17, A.108, L.110, S.117 Ligands: 6CA.2 20 PLIP interactions: 4 interactions with chain B, 6 interactions with chain C, 4 interactions with chain D, 6 interactions with chain A Hydrophobic interactions: B:L.17, B:A.108, B:L.110, C:L.110, D:L.17, D:A.108, D:L.110, A:K.15, A:K.15, A:L.17, A:L.17, A:A.108, A:L.110 Salt bridges: B:K.15, C:K.15, D:K.15 Hydrogen bonds: C:A.109 Water bridges: C:K.15, C:K.15, C:V.16 6CA.2: 24 residues within 4Å: Chain A: K.15, L.17, A.108, A.109, L.110, S.117 Chain B: K.15, L.17, A.108, L.110, S.117 Chain C: K.15, L.17, A.108, L.110, S.117, T.119 Chain D: K.15, L.17, A.108, L.110, S.117, T.119 Ligands: 6CA.1 20 PLIP interactions: 4 interactions with chain B, 6 interactions with chain C, 4 interactions with chain D, 6 interactions with chain A Hydrophobic interactions: B:L.17, B:A.108, B:L.110, C:K.15, C:K.15, C:L.17, C:L.17, C:A.108, C:L.110, D:L.17, D:A.108, D:L.110, A:L.110 Salt bridges: B:K.15, D:K.15, A:K.15 Hydrogen bonds: A:A.109 Water bridges: A:K.15, A:K.15, A:V.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Green, N.S. et al., Synthesis and characterization of potent bivalent amyloidosis inhibitors that bind prior to transthyretin tetramerization. J.Am.Chem.Soc. (2003)

Release Date

2006-02-28

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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