SMTL ID : 6gr7.1

Crystal Structure Of Human Transthyretin in complex with 2,4,5-trichlorophenoxyacetic acid (2,4,5-T)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-tetramer

Ligands

4 x F52: 2-[2,4,5-tris(chloranyl)phenoxy]ethanoic acid(Non-covalent)

F52.1: 12 residues within 4Å: Chain A: K.15, L.17, A.108, A.109, L.110, S.117 Chain C: K.15, L.17, A.108, A.109, L.110 Ligands: F52.3 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:L.17 Salt bridges: A:K.15, C:K.15 Halogen bonds: A:A.109, A:S.117 Water bridges: C:K.15 F52.2: 11 residues within 4Å: Chain B: K.15, L.17, A.108, A.109, L.110 Chain D: K.15, L.17, A.108, A.109, L.110 Ligands: F52.4 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: B:L.17 Water bridges: D:K.15 Salt bridges: D:K.15 F52.3: 12 residues within 4Å: Chain A: K.15, L.17, A.108, A.109, L.110 Chain C: K.15, L.17, A.108, A.109, L.110, S.117 Ligands: F52.1 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:L.17 Salt bridges: C:K.15, A:K.15 Halogen bonds: C:A.109, C:S.117 Water bridges: A:K.15 F52.4: 11 residues within 4Å: Chain B: K.15, L.17, A.108, A.109, L.110 Chain D: K.15, L.17, A.108, A.109, L.110 Ligands: F52.2 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: D:L.17 Water bridges: B:K.15 Salt bridges: B:K.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Interspecies Variation between Fish and Human Transthyretins in Their Binding of Thyroid-Disrupting Chemicals. Environ. Sci. Technol. (2018)

Release Date

2018-07-11

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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