SMTL ID : 3gs0.1 (1 other biounit)

Human transthyretin (TTR) complexed with (S)-3-(9H-fluoren-9-ylideneaminooxy)-2-methylpropanoic acid (inhibitor 16)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

4 x 6BD: (2S)-3-[(9H-fluoren-9-ylideneamino)oxy]-2-methylpropanoic acid(Non-covalent)

6BD.1: 15 residues within 4Å: Chain A: K.15, L.17, A.108, L.110, S.117, V.121 Chain C: K.15, L.17, A.108, L.110, S.117, T.118, T.119, V.121 Ligands: 6BD.3 11 PLIP interactions: 5 interactions with chain A, 6 interactions with chain C Hydrophobic interactions: A:K.15, A:L.17, A:A.108, A:L.110, A:V.121, C:L.17, C:A.108, C:L.110, C:T.119, C:V.121 Hydrogen bonds: C:L.110 6BD.2: 15 residues within 4Å: Chain B: K.15, L.17, A.108, L.110, S.117, V.121 Chain D: K.15, L.17, A.108, L.110, S.117, T.118, T.119, V.121 Ligands: 6BD.4 9 PLIP interactions: 5 interactions with chain D, 4 interactions with chain B Hydrophobic interactions: D:L.17, D:A.108, D:L.110, D:V.121, B:L.17, B:A.108, B:L.110, B:V.121 Hydrogen bonds: D:T.119 6BD.3: 15 residues within 4Å: Chain A: K.15, L.17, A.108, L.110, S.117, T.118, T.119, V.121 Chain C: K.15, L.17, A.108, L.110, S.117, V.121 Ligands: 6BD.1 11 PLIP interactions: 6 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: A:L.17, A:A.108, A:L.110, A:T.119, A:V.121, C:K.15, C:L.17, C:A.108, C:L.110, C:V.121 Hydrogen bonds: A:L.110 6BD.4: 15 residues within 4Å: Chain B: K.15, L.17, A.108, L.110, S.117, T.118, T.119, V.121 Chain D: K.15, L.17, A.108, L.110, S.117, V.121 Ligands: 6BD.2 9 PLIP interactions: 5 interactions with chain B, 4 interactions with chain D Hydrophobic interactions: B:L.17, B:A.108, B:L.110, B:V.121, D:L.17, D:A.108, D:L.110, D:V.121 Hydrogen bonds: B:T.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Palaninathan, S.K. et al., Novel transthyretin amyloid fibril formation inhibitors: synthesis, biological evaluation, and X-ray structural analysis. Plos One (2009)

Release Date

2009-07-28

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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