SMTL ID : 3p3t.1

Human transthyretin (TTR) complexed with 4-(3-(2-flourophenoxy)propyl)-3,5-dimethyl-1H-pyrazole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-tetramer

Ligands

4 x 3M3: 4-[3-(2-fluorophenoxy)propyl]-3,5-dimethyl-1H-pyrazole(Non-covalent)

3M3.1: 15 residues within 4Å: Chain A: K.15, T.106, A.108, A.109, L.110, S.117, T.119, V.121 Chain C: K.15, L.17, A.108, L.110, S.117, T.119 Ligands: 3M3.3 8 PLIP interactions: 3 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:K.15, C:L.17, A:K.15, A:T.106, A:L.110 Hydrogen bonds: C:S.117, A:S.117, A:S.117 3M3.2: 14 residues within 4Å: Chain B: K.15, T.106, A.108, L.110, S.117, V.121 Chain D: K.15, L.17, A.108, L.110, S.117, T.118, T.119 Ligands: 3M3.4 8 PLIP interactions: 5 interactions with chain D, 3 interactions with chain B Hydrophobic interactions: D:K.15, D:L.17, D:T.119, B:T.106, B:L.110 Hydrogen bonds: D:S.117, D:S.117, B:S.117 3M3.3: 15 residues within 4Å: Chain A: K.15, L.17, A.108, L.110, S.117, T.119 Chain C: K.15, T.106, A.108, A.109, L.110, S.117, T.119, V.121 Ligands: 3M3.1 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:K.15, C:T.106, C:L.110, A:K.15, A:L.17 Hydrogen bonds: C:S.117, C:S.117, A:S.117 3M3.4: 14 residues within 4Å: Chain B: K.15, L.17, A.108, L.110, S.117, T.118, T.119 Chain D: K.15, T.106, A.108, L.110, S.117, V.121 Ligands: 3M3.2 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:K.15, B:L.17, B:T.119, D:T.106, D:L.110 Hydrogen bonds: B:S.117, B:S.117, D:S.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alhamadsheh, M.M. et al., Potent kinetic stabilizers that prevent transthyretin-mediated cardiomyocyte proteotoxicity. Sci Transl Med (2011)

Release Date

2011-08-24

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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