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SMTL ID : 1zqr.1

DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF NICL2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

monomer

Ligands

1 x DC- DA- DT- DT- DA- DG- DA- DA: DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3')(Non-covalent)

DC-DA-DT-DT-DA-DG-DA-DA.1:

15 residues within 4Å:

Chain A: N.133, S.229, K.230, G.231, E.232, T.233, K.234, Y.296
Ligands: DT-DC-DT-DA-DA-DT-DG.2, DT-DC-DT-DA-DA-DT-DG.2, DT-DC-DT-DA-DA-DT-DG.2, DT-DC-DT-DA-DA-DT-DG.2, DT-DC-DT-DA-DA-DT-DG.2, DT-DC-DT-DA-DA-DT-DG.2, DT-DC-DT-DA-DA-DT-DG.2

Protein-ligand interaction information (PLIP) not available

1 x DT- DC- DT- DA- DA- DT- DG: DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3')(Non-covalent)

DT-DC-DT-DA-DA-DT-DG.2:

22 residues within 4Å:

Chain A: V.103, S.104, G.105, I.106, G.107, P.108, S.109, A.110, D.192, K.234, R.254, D.256, R.258
Ligands: DC-DA-DT-DT-DA-DG-DA-DA.1, DC-DA-DT-DT-DA-DG-DA-DA.1, DC-DA-DT-DT-DA-DG-DA-DA.1, DC-DA-DT-DT-DA-DG-DA-DA.1, DC-DA-DT-DT-DA-DG-DA-DA.1, DC-DA-DT-DT-DA-DG-DA-DA.1, DC-DA-DT-DT-DA-DG-DA-DA.1, NI.3, NA.4

Protein-ligand interaction information (PLIP) not available

2 x NI: NICKEL (II) ION(Non-covalent)

NI.3:	4 residues within 4Å: Chain A: D.190, M.191, D.192 Ligands: DT-DC-DT-DA-DA-DT-DG.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.192
NI.5:	1 residues within 4Å: Chain A: H.134 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.134, H₂O.2

1 x NA: SODIUM ION(Non-functional Binders)

NA.4:

5 residues within 4Å:

Chain A: T.101, R.102, V.103, I.106
Ligands: DT-DC-DT-DA-DA-DT-DG.2

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:V.103

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Pelletier, H. et al., Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis. Biochemistry (1996)

Release Date

1996-11-15

Peptides

PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7))

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