SMTL ID : 2i4p.1

Crystal structure of the complex between PPARgamma and the partial agonist LT127 (ureidofibrate derivative). Structure obtained from crystals of the apo-form soaked for 30 days.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

1 x DRH: (2S)-2-(4-{2-[1,3-BENZOXAZOL-2-YL(HEPTYL)AMINO]ETHYL}PHENOXY)-2-METHYLBUTANOIC ACID(Non-covalent)

DRH.1: 17 residues within 4Å: Chain A: F.36, F.92, C.95, Q.96, R.98, S.99, A.102, I.106, H.133, I.135, I.136, M.139, L.140, I.151, M.174, H.259, Y.283 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.36, A:F.92, A:F.92, A:Q.96, A:I.106, A:I.135, A:I.136, A:M.139, A:L.140, A:I.151 Hydrogen bonds: A:S.99, A:Y.283 Salt bridges: A:H.133, A:H.259 pi-Cation interactions: A:K.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pochetti, G. et al., Insights into the mechanism of partial agonism: crystal structures of the peroxisome proliferator-activated receptor gamma ligand-binding domain in the complex with two enantiomeric ligands. J.Biol.Chem. (2007)

Release Date

2007-04-17

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

Related Entries With Identical Sequence