SMTL ID : 2pw8.1

Crystal structure of sulfo-hirudin complexed to thrombin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 3 residues within 4Å: Chain A: D.2, K.11 Chain B: H.116 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:D.2, B:H.116, H2O.1, H2O.1, H2O.1

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain B: D.232, R.233, K.236 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.233, B:K.236 Water bridges: B:G.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, C.C. et al., Crystal structure of a biosynthetic sulfo-hirudin complexed to thrombin. J.Am.Chem.Soc. (2007)

Release Date

2007-08-21

Peptides

Thrombin light chain: A
Thrombin heavy chain: B
Hirudin variant-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

Thrombin light chain

Thrombin heavy chain

Hirudin variant-1

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