SMTL ID : 1ypj.1

Thrombin Inhibitor Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x UIB: (1R,3AS,4R,8AS,8BR)-4-{5-(PHENYL[1,3]DIOXOL-5-YLMETHYL)-4-ETHYL-2,3,3-TRIMETHYL-6-OXO-OCTAHYDRO-PYRROLO[3,4-C]PYRROL-1-YL}-BENZAMIDINE(Non-covalent)

UIB.1: 17 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, N.95, L.96, I.179, D.199, A.200, E.202, S.205, V.225, S.226, W.227, G.228, G.230, G.238 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:H.43, B:Y.47, B:W.50, B:V.225, B:W.227, B:W.227 Hydrogen bonds: B:D.199, B:A.200, B:G.228, B:G.230 Water bridges: B:F.239 Salt bridges: B:E.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fokkens, J. et al., A simple protocol to estimate differences in protein binding affinity for enantiomers without prior resolution of racemates. Angew.Chem.Int.Ed.Engl. (2006)

Release Date

2006-01-17

Peptides

Thrombin light chain: A
Thrombin heavy chain: B
Hirudin: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

Thrombin light chain

Thrombin heavy chain

Hirudin

Related Entries With Identical Sequence