SMTL ID : 1gj5.1

SELECTIVITY AT S1, H2O DISPLACEMENT, UPA, TPA, SER190/ALA190 PROTEASE, STRUCTURE-BASED DRUG DESIGN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain B: D.232, R.233, D.234, G.235, K.236, Y.237 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.235, B:K.236, B:K.236 Water bridges: B:R.233

1 x 130: 2-(2-HYDROXY-BIPHENYL)-1H-BENZOIMIDAZOLE-5-CARBOXAMIDINE(Non-covalent)

130.2: 25 residues within 4Å: Chain B: L.27, C.28, H.43, C.44, Y.47, W.50, K.52, F.54, D.199, A.200, C.201, E.202, G.203, D.204, S.205, V.225, S.226, W.227, G.228, G.230, C.231, D.232, G.238, F.239, Y.240 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:W.50, B:A.200, B:E.202, B:V.225 Hydrogen bonds: B:H.43, B:D.199, B:D.199, B:S.205, B:S.205, B:S.205 Water bridges: B:G.203, B:W.227 pi-Stacking: B:H.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Katz, B.A. et al., Engineering inhibitors highly selective for the S1 sites of Ser190 trypsin-like serine protease drug targets. Chem.Biol. (2001)

Release Date

2002-04-27

Peptides

THROMBIN: A
THROMBIN: B
ACETYL HIRUDIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

THROMBIN

THROMBIN

ACETYL HIRUDIN

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