SMTL ID : 1ypk.1

Thrombin Inhibitor Complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

hetero-oligomer

Ligands

1 x CCR: [N-[N-(4-METHOXY-2,3,6-TRIMETHYLPHENYLSULFONYL)-L-ASPARTYL]-D-(4-AMIDINO-PHENYLALANYL)]-PIPERIDINE(Non-covalent)

CCR.1: 20 residues within 4Å: Chain B: H.43, Y.47, W.50, W.92, E.94, N.95, L.96, I.179, D.199, A.200, C.201, S.205, V.225, S.226, W.227, G.228, E.229, G.230, C.231, G.238 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:Y.47, B:Y.47, B:W.50, B:L.96, B:I.179, B:V.225, B:W.227, B:W.227 Hydrogen bonds: B:D.199, B:S.205, B:W.227, B:G.228, B:G.228, B:G.230 Water bridges: B:F.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fokkens, J. et al., A Simple Protocol To Estimate Differences in Protein Binding Affinity for Enantiomers without Prior Resolution of Racemates. Angew.Chem.Int.Ed.Engl. (2006)

Release Date

2006-01-17

Peptides

Prothrombin light chain: A
Prothrombin heavy chain: B
10-mer peptide from Acety-Hirudin(54-65) sulfated: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

Prothrombin light chain

Prothrombin heavy chain

10-mer peptide from Acety-Hirudin(54-65) sulfated

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