SMTL ID : 4ufd.1

Thrombin in complex with 4-(((1-((2S)-1-((2R)-2-(benzylsulfonylamino)- 3-phenyl-propanoyl)pyrrolidin-2-yl)-1-oxo-ethyl)amino)methyl) benzamidine

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.43 Å
Oligo State
hetero-1-1-1-mer
Ligands
1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
2 x NA: SODIUM ION(Non-functional Binders)
2 x GOL: GLYCEROL(Non-functional Binders)
1 x S49: (2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[(2R)-3-phenyl-2-[(phenylmethyl)sulfonylamino]propanoyl]pyrrolidine-2-carboxamide(Non-covalent)
1 x PO4: PHOSPHATE ION(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Ruhmann, E.H. et al., Boosting Affinity by Correct Ligand Preorganization for the S2 Pocket of Thrombin: A Study by Isothermal Titration Calorimetry, Molecular Dynamics, and High-Resolution Crystal Structures. Chemmedchem (2016)
Release Date
2016-01-27
Peptides
THROMBIN HEAVY CHAIN: A
HIRUDIN VARIANT-2: B
THROMBIN LIGHT CHAIN: C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
H
B
I
C
L

THROMBIN HEAVY CHAIN

HIRUDIN VARIANT-2

THROMBIN LIGHT CHAIN

Related Entries With Identical Sequence

1bcu.1 | 1bmm.1 | 1bmn.1 | 1d3d.1 | 1d3p.1 | 1d3q.1 | 1d3t.1 | 1d4p.1 | 1fph.1 | 1gj4.1 | 1gj5.1 | 1hdt.1 | 1lhc.1 | 1lhd.1 | 1lhe.1 | 1lhf.1 | 1lhg.1 | 1p8v.1 | 1sb1.1 | 2c8w.1 | 2c8x.1 | 2c8y.1 | 2c8z.1 | 2c90.1 | 2c93.1 | 2pw8.1 | 3biu.1 | 3biv.1 | 3dd2.1 | 3tu7.1  more...