SMTL ID : 1ypg.1

Thrombin Inhibitor Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x UIR: (1R,3AS,4R,8AS,8BR)-4-(2-BENZO[1,3]DIOXOL-5-YL-1-CYCLOPROPYL-3-OXO-DECAHYDRO-PYRROLO[3,4-A]PYRROLIZIN-4-YL)-BENZAMIDINE(Non-covalent)

UIR.1: 16 residues within 4Å: Chain B: H.43, Y.47, E.94, N.95, L.96, D.199, A.200, E.202, S.205, V.225, S.226, W.227, G.228, G.230, C.231, G.238 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:H.43, B:Y.47, B:Y.47, B:L.96, B:V.225, B:W.227, B:W.227 Hydrogen bonds: B:D.199, B:D.199, B:A.200, B:G.228 Water bridges: B:D.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fokkens, J. et al., A simple protocol to estimate differences in protein binding affinity for enantiomers without prior resolution of racemates. Angew.Chem.Int.Ed.Engl. (2006)

Release Date

2006-01-17

Peptides

Thrombin light chain: A
Thrombin heavy chain: B
Hirudin: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
I

Thrombin light chain

Thrombin heavy chain

Hirudin

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