SMTL ID : 1eb1.1

Complex structure of human thrombin with N-methyl-arginine inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZAL- PRO- MMO: 3-CYCLOHEXYL-D-ALANYL-L-PROLYL-N~2~-METHYL-L-ARGININE(Non-covalent)

ZAL-PRO-MMO.1: 19 residues within 4Å: Chain B: H.43, Y.47, W.50, E.94, N.95, I.179, D.199, A.200, C.201, E.202, G.203, D.204, S.205, S.226, W.227, G.228, G.230, C.231, G.238 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:Y.47, B:W.50, B:I.179, B:W.227 Hydrogen bonds: B:G.203, B:D.204, B:S.205, B:W.227, B:G.228, B:G.230 Water bridges: B:W.227, B:G.228 Salt bridges: B:D.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Friedrich, R. et al., The Methyl Group of N(Alpha)(Me)Arg-Containing Peptides Disturbs the Active-Site Geometry of Thrombin, Impairing Efficient Cleavage. J.Mol.Biol. (2002)

Release Date

2002-01-28

Peptides

PEPTIDE INHIBITOR: A
THROMBIN HEAVY CHAIN: B
THROMBIN LIGHT CHAIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

PEPTIDE INHIBITOR

THROMBIN HEAVY CHAIN

THROMBIN LIGHT CHAIN

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