SMTL ID : 3j2p.1

CryoEM structure of Dengue virus envelope protein heterotetramer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: H.149, V.151, G.152, N.153, T.155 Chain C: G.102 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 6 residues within 4Å: Chain A: G.102 Chain C: H.149, V.151, G.152, N.153, T.155 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.67 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.67 NAG.4: 1 residues within 4Å: Chain C: N.67 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., Cryo-EM structure of the mature dengue virus at 3.5-A resolution. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-12-19

Peptides

Envelope protein E: AC
Small envelope protein M: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Membrane

We predict this structure to be a membrane protein.
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Envelope protein E

Small envelope protein M

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