SMTL ID : 3l2q.1

Crystal structure of the Prototype Foamy Virus (PFV) intasome in apo form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

homo-tetramer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.65, H.69, C.99, C.102 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.65, A:H.69, A:C.99, A:C.102 ZN.5: 4 residues within 4Å: Chain E: H.65, H.69, C.99, C.102 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.65, E:H.69, E:C.99, E:C.102

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: S.165, T.166, S.167 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.166, A:T.166, A:S.167 GOL.3: 5 residues within 4Å: Chain A: P.138, S.139, Q.140, T.243, K.244 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.140, A:Q.140, A:K.244 GOL.4: 3 residues within 4Å: Chain A: H.341, K.342, H.360 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.342, A:H.360 GOL.6: 3 residues within 4Å: Chain E: S.165, T.166, S.167 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:T.166, E:T.166, E:S.167 GOL.7: 5 residues within 4Å: Chain E: P.138, S.139, Q.140, T.243, K.244 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:Q.140, E:Q.140, E:K.244 GOL.8: 3 residues within 4Å: Chain E: H.341, K.342, H.360 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:H.341, E:K.342

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hare, S. et al., Retroviral intasome assembly and inhibition of DNA strand transfer. Nature (2010)

Release Date

2010-02-09

Peptides

Integrase: ABEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
A

F
B

Integrase

Related Entries With Identical Sequence