- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.57 Å
- Oligo State
- homo-tetramer
- Ligands
- 10 x SO4: SULFATE ION(Non-functional Binders)
- 18 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 3 residues within 4Å:- Chain A: S.165, T.166, S.167
Ligand excluded by PLIPGOL.3: 5 residues within 4Å:- Chain A: Q.63, L.82, Y.83
- Chain E: P.280, F.281
Ligand excluded by PLIPGOL.6: 3 residues within 4Å:- Chain A: P.118, D.119
- Chain C: T.3
Ligand excluded by PLIPGOL.7: 3 residues within 4Å:- Chain A: Q.189, T.194, F.211
Ligand excluded by PLIPGOL.12: 6 residues within 4Å:- Chain A: L.295, Q.299
- Chain B: Y.266, Q.270, G.274, D.276
Ligand excluded by PLIPGOL.13: 5 residues within 4Å:- Chain B: I.130, H.186, S.187, D.188, N.227
Ligand excluded by PLIPGOL.14: 8 residues within 4Å:- Chain A: V.263, Y.306
- Chain C: C.6, A.7, T.8
- Chain D: C.11, A.12
- Ligands: SO4.8
Ligand excluded by PLIPGOL.15: 3 residues within 4Å:- Chain D: C.16, A.17, A.18
Ligand excluded by PLIPGOL.16: 8 residues within 4Å:- Chain D: A.7, T.8
- Chain E: L.76, A.80, W.84, M.88, R.89
- Ligands: HEZ.25
Ligand excluded by PLIPGOL.18: 3 residues within 4Å:- Chain E: S.165, T.166, S.167
Ligand excluded by PLIPGOL.19: 5 residues within 4Å:- Chain A: P.280, F.281
- Chain E: Q.63, L.82, Y.83
Ligand excluded by PLIPGOL.22: 3 residues within 4Å:- Chain E: P.118, D.119
- Chain G: T.3
Ligand excluded by PLIPGOL.23: 3 residues within 4Å:- Chain E: Q.189, T.194, F.211
Ligand excluded by PLIPGOL.28: 6 residues within 4Å:- Chain E: L.295, Q.299
- Chain F: Y.266, Q.270, G.274, D.276
Ligand excluded by PLIPGOL.29: 5 residues within 4Å:- Chain F: I.130, H.186, S.187, D.188, N.227
Ligand excluded by PLIPGOL.30: 8 residues within 4Å:- Chain E: V.263, Y.306
- Chain G: C.6, A.7, T.8
- Chain H: C.11, A.12
- Ligands: SO4.24
Ligand excluded by PLIPGOL.31: 3 residues within 4Å:- Chain H: C.16, A.17, A.18
Ligand excluded by PLIPGOL.32: 8 residues within 4Å:- Chain A: L.76, A.80, W.84, M.88, R.89
- Chain H: A.7, T.8
- Ligands: HEZ.9
Ligand excluded by PLIP- 2 x HEZ: HEXANE-1,6-DIOL(Non-covalent)
HEZ.9: 8 residues within 4Å:- Chain A: E.73, L.77, A.80, R.89
- Chain E: K.265
- Chain H: T.8, T.9
- Ligands: GOL.32
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain E- Hydrophobic interactions: A:L.77, E:K.265
HEZ.25: 8 residues within 4Å:- Chain A: K.265
- Chain D: T.8, T.9
- Chain E: E.73, L.77, A.80, R.89
- Ligands: GOL.16
3 PLIP interactions:2 interactions with chain E, 1 interactions with chain A- Hydrophobic interactions: E:L.77, A:K.265
- Hydrogen bonds: E:E.73
- 2 x ZN: ZINC ION(Non-covalent)
ZN.10: 4 residues within 4Å:- Chain A: H.65, H.69, C.99, C.102
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.65, A:H.69, A:C.99, A:C.102
ZN.26: 4 residues within 4Å:- Chain E: H.65, H.69, C.99, C.102
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:H.65, E:H.69, E:C.99, E:C.102
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hare, S. et al., 3'-Processing and strand transfer catalysed by retroviral integrase in crystallo. Embo J. (2012)
- Release Date
- 2012-05-23
- Peptides
- Pro-Pol polyprotein: ABEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.57 Å
- Oligo State
- homo-tetramer
- Ligands
- 10 x SO4: SULFATE ION(Non-functional Binders)
- 18 x GOL: GLYCEROL(Non-functional Binders)
- 2 x HEZ: HEXANE-1,6-DIOL(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hare, S. et al., 3'-Processing and strand transfer catalysed by retroviral integrase in crystallo. Embo J. (2012)
- Release Date
- 2012-05-23
- Peptides
- Pro-Pol polyprotein: ABEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BE
AF
B