SMTL ID : 4e7l.1

PFV integrase Strand Transfer Complex (STC-Mn*) following reaction in crystallo, at 3.0 A resolution.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-tetramer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.65, H.69, C.99, C.102 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.65, A:H.69, A:C.99, A:C.102 ZN.6: 4 residues within 4Å: Chain G: H.65, H.69, C.99, C.102 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:H.65, G:H.69, G:C.99, G:C.102

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 5 residues within 4Å: Chain A: D.131, E.224 Chain D: A.17 Chain F: C.1 Ligands: MN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.131, A:D.131, A:E.224, A:E.224 MN.3: 6 residues within 4Å: Chain A: D.131, Y.132, D.188 Chain E: G.13 Chain F: C.1 Ligands: MN.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.131, A:D.188 MN.5: 2 residues within 4Å: Chain B: D.131, D.188 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.131, B:D.131, B:D.188 MN.7: 5 residues within 4Å: Chain G: D.131, E.224 Chain J: A.17 Chain L: C.1 Ligands: MN.8 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:D.131, G:D.131, G:E.224, G:E.224 MN.8: 6 residues within 4Å: Chain G: D.131, Y.132, D.188 Chain K: G.13 Chain L: C.1 Ligands: MN.7 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:D.131, G:D.188 MN.10: 2 residues within 4Å: Chain H: D.131, D.188 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:D.131, H:D.131, H:D.188

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain B: K.222, R.225, S.261, P.262, V.263 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.222, B:R.225 SO4.9: 5 residues within 4Å: Chain H: K.222, R.225, S.261, P.262, V.263 2 PLIP interactions: 2 interactions with chain H Salt bridges: H:K.222, H:R.225

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hare, S. et al., 3'-Processing and strand transfer catalysed by retroviral integrase in crystallo. Embo J. (2012)

Release Date

2012-05-23

Peptides

Pro-Pol polyprotein: ABGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

G
A

H
B

Pro-Pol polyprotein

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