- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.55 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 6 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 4 residues within 4Å:- Chain A: D.131, D.188
- Chain D: A.17
- Ligands: MN.3
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.131, A:D.188, H2O.1, H2O.1
MN.3: 4 residues within 4Å:- Chain A: D.131, E.224
- Chain D: A.17
- Ligands: MN.2
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.131, A:E.224, A:E.224, H2O.1
MN.10: 2 residues within 4Å:- Chain B: D.131, D.188
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.131, B:D.188, H2O.7, H2O.7, H2O.9
MN.13: 4 residues within 4Å:- Chain E: D.131, D.188
- Chain H: A.17
- Ligands: MN.14
4 PLIP interactions:2 interactions with chain E, 2 Ligand-Water interactions- Metal complexes: E:D.131, E:D.188, H2O.11, H2O.11
MN.14: 4 residues within 4Å:- Chain E: D.131, E.224
- Chain H: A.17
- Ligands: MN.13
4 PLIP interactions:3 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:D.131, E:E.224, E:E.224, H2O.11
MN.21: 2 residues within 4Å:- Chain F: D.131, D.188
5 PLIP interactions:2 interactions with chain F, 3 Ligand-Water interactions- Metal complexes: F:D.131, F:D.188, H2O.17, H2O.18, H2O.19
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 2 residues within 4Å:- Chain A: H.341, K.342
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.342
- Salt bridges: A:H.341, A:K.342
SO4.11: 5 residues within 4Å:- Chain B: K.222, R.225, S.261, P.262, V.263
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.263
- Salt bridges: B:K.222, B:R.225
SO4.15: 2 residues within 4Å:- Chain E: H.341, K.342
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:K.342
- Salt bridges: E:H.341, E:K.342
SO4.22: 5 residues within 4Å:- Chain F: K.222, R.225, S.261, P.262, V.263
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:V.263
- Salt bridges: F:K.222, F:R.225
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 3 residues within 4Å:- Chain A: S.165, T.166, S.167
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.166, A:T.166, A:S.167, A:S.167
GOL.6: 3 residues within 4Å:- Chain A: S.139, Q.140, K.244
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.140
GOL.7: 5 residues within 4Å:- Chain A: L.295, Q.299
- Chain B: Q.270, I.275, D.276
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:Q.299, B:Q.270, B:D.276
GOL.8: 4 residues within 4Å:- Chain A: Q.63, Y.83
- Chain E: P.280, F.281
3 PLIP interactions:1 interactions with chain E, 2 interactions with chain A- Hydrogen bonds: E:F.281, A:Q.63, A:Y.83
GOL.16: 3 residues within 4Å:- Chain E: S.165, T.166, S.167
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:T.166, E:S.167, E:S.167
GOL.17: 3 residues within 4Å:- Chain E: S.139, Q.140, K.244
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:Q.140
GOL.18: 5 residues within 4Å:- Chain E: L.295, Q.299
- Chain F: Q.270, I.275, D.276
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain E- Hydrogen bonds: F:Q.270, F:D.276, E:Q.299
GOL.19: 4 residues within 4Å:- Chain A: P.280, F.281
- Chain E: Q.63, Y.83
4 PLIP interactions:3 interactions with chain E, 1 interactions with chain A- Hydrogen bonds: E:Q.63, E:Y.83, E:Y.83, A:F.281
- 2 x NH4: AMMONIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hare, S. et al., Retroviral intasome assembly and inhibition of DNA strand transfer. Nature (2010)
- Release Date
- 2010-10-20
- Peptides
- PFV integrase: ABEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.55 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 6 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 2 x NH4: AMMONIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hare, S. et al., Retroviral intasome assembly and inhibition of DNA strand transfer. Nature (2010)
- Release Date
- 2010-10-20
- Peptides
- PFV integrase: ABEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BE
AF
B