SMTL ID : 3m9f.1

HIV protease complexed with compound 10b

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x 595: N-[(1S,5S)-5-{[(4-aminophenyl)sulfonyl](3-methylbutyl)amino}-1-methyl-6-oxohexyl]-Nalpha-(methoxycarbonyl)-beta-phenyl-L-phenylalaninamide(Non-covalent)

595.1: 27 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: R.8, L.23, D.25, G.27, A.28, D.30, V.32, G.48, G.49, I.50, P.81, V.82, I.84 Ligands: 595.3 22 PLIP interactions: 10 interactions with chain A, 12 interactions with chain B Hydrophobic interactions: A:A.28, A:V.32, A:I.50, A:P.81, B:L.23, B:A.28, B:I.50, B:I.50, B:P.81, B:V.82, B:I.84 Hydrogen bonds: A:D.29, A:D.29, A:G.48, A:G.48, A:I.50, B:R.8, B:D.30, B:I.50 Salt bridges: A:D.25, B:D.25 Water bridges: B:D.30 595.3: 26 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.30, V.32, G.48, G.49, I.50, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, I.47, G.48, G.49, I.50, P.81, V.82, I.84 Ligands: 595.1 21 PLIP interactions: 10 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:L.23, A:A.28, A:I.50, A:V.82, A:I.84, B:L.23, B:I.50, B:P.81 Hydrogen bonds: A:R.8, A:D.30, A:D.30, A:I.50, B:D.29, B:D.29, B:G.48, B:G.48, B:I.50 Salt bridges: A:D.25, B:D.25 Water bridges: B:D.30, B:D.30

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: G.73, T.74, N.88 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain B: W.6 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain B: G.73, T.74, N.88 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jones, K.L. et al., Epsilon substituted lysinol derivatives as HIV-1 protease inhibitors. Bioorg.Med.Chem.Lett. (2010)

Release Date

2010-06-30

Peptides

HIV-1 protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 protease

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