SMTL ID : 5ivr.1

Crystal Structure of HIV Protease complexed with methyl N-[(1S)-1-[[2-[(3S)-3-[(4-aminophenyl)methylamino]-4-hydroxy-butyl]phenyl]carbamoyl]-2,2-diphenyl-ethyl]carbamate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: G.73, T.74, N.88 Ligand excluded by PLIP CL.2: 5 residues within 4Å: Chain A: G.49, I.50 Chain B: G.49, I.50 Ligands: 6EG.3 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain B: G.73, T.74, N.88 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain B: W.6 Ligand excluded by PLIP

1 x 6EG: N-{2-[(3S)-3-{[(4-aminophenyl)methyl]amino}-4-hydroxybutyl]phenyl}-Nalpha-(methoxycarbonyl)-beta-phenyl-L-phenylalaninamide(Non-covalent)

6EG.3: 20 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, G.48, I.50, P.81, V.82, I.84 Chain B: D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50, F.53 Ligands: CL.2 19 PLIP interactions: 11 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:L.23, A:I.50, A:P.81, A:V.82, A:V.82, A:V.82, A:I.84, B:A.28, B:D.30, B:V.32, B:I.50 Hydrogen bonds: A:R.8, A:D.25, B:D.29, B:D.29, B:G.48 Water bridges: A:G.48, A:G.48, B:G.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bungard, C.J. et al., Discovery of MK-8718, an HIV Protease Inhibitor Containing a Novel Morpholine Aspartate Binding Group. Acs Med.Chem.Lett. (2016)

Release Date

2016-05-18

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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