SMTL ID : 7wcq.1

Crystal structure of HIV-1 protease in complex with lactam derivative 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

homo-dimer

Ligands

2 x 8OC: (3R,4R)-3-[(4-fluorophenyl)methyl]-1-[(4-methoxyphenyl)methyl]-3-(4-methylsulfonylphenyl)-4-oxidanyl-pyrrolidin-2-one(Non-covalent)

8OC.1: 21 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, D.30, I.47, G.48, I.50, P.81, V.82, I.84 Chain B: D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50 Ligands: 8OC.2 11 PLIP interactions: 4 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:A.28, A:P.81, A:V.82, A:I.84, B:A.28, B:D.30, B:V.32 Hydrogen bonds: B:G.27, B:D.29, B:D.30, B:I.50 8OC.2: 21 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50 Chain B: D.25, G.27, A.28, D.29, D.30, I.47, G.48, I.50, P.81, V.82, I.84 Ligands: 8OC.1 11 PLIP interactions: 7 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:A.28, A:D.30, A:V.32, B:A.28, B:P.81, B:V.82, B:I.84 Hydrogen bonds: A:G.27, A:D.29, A:D.30, A:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kojima, E. et al., Pocket-to-Lead: Structure-Based De Novo Design of Novel Non-peptidic HIV-1 Protease Inhibitors Using the Ligand Binding Pocket as a Template. J.Med.Chem. (2022)

Release Date

2022-11-02

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protease

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