SMTL ID : 3qyz.1

Crystal structure of ERK2 in complex with an inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

monomer

Ligands

1 x Z8B: 5'-azido-8-bromo-5'-deoxyadenosine(Non-covalent)

Z8B.1: 14 residues within 4Å: Chain A: I.35, G.36, E.37, G.38, V.43, A.56, Q.109, D.110, L.111, M.112, D.115, K.118, L.160 Ligands: DMS.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.37, A:E.37, A:D.110, A:M.112, A:D.115, A:K.118

11 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 6 residues within 4Å: Chain A: K.142, H.145, S.146, K.211, V.308, E.309 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.211 Salt bridges: A:E.309 DMS.3: 3 residues within 4Å: Chain A: T.194, R.195, W.196 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.196 pi-Cation interactions: A:W.196, A:W.196 DMS.4: 5 residues within 4Å: Chain A: G.38, A.39, Y.40, G.41 Ligands: Z8B.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.39, A:Y.40 pi-Cation interactions: A:Y.40 DMS.5: 5 residues within 4Å: Chain A: L.120, K.121, T.122, H.124, N.228 No protein-ligand interaction detected (PLIP) DMS.6: 4 residues within 4Å: Chain A: N.242, L.245, G.246, K.274 No protein-ligand interaction detected (PLIP) DMS.7: 6 residues within 4Å: Chain A: S.227, R.229, P.230, I.231, L.282, F.283 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.227 DMS.8: 3 residues within 4Å: Chain A: D.128, H.129, Y.320 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:D.128 pi-Cation interactions: A:H.129 DMS.9: 6 residues within 4Å: Chain A: E.85, N.86, Y.132, Y.135, Q.136, R.139 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.86, A:R.139 DMS.10: 5 residues within 4Å: Chain A: H.303, K.304, R.305, E.307, Q.310 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.310 DMS.11: 7 residues within 4Å: Chain A: H.124, L.125, N.127, I.130, L.226, N.285, A.286 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.287 DMS.12: 5 residues within 4Å: Chain A: R.81, R.83, Y.143, A.329, E.330 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.330 Water bridges: A:Y.143 Salt bridges: A:E.330

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.13: 4 residues within 4Å: Chain A: Y.191, R.195, R.198, Y.237 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.195, A:R.198 Salt bridges: A:R.195, A:R.198 SO4.14: 4 residues within 4Å: Chain A: T.67, R.71, L.174, R.176 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.67 Water bridges: A:R.152 Salt bridges: A:R.71, A:R.176

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.15: 2 residues within 4Å: Chain A: L.238, Y.267 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

le Maire, A. et al., In-plate protein crystallization, in situ ligand soaking and X-ray diffraction. Acta Crystallogr.,Sect.D (2011)

Release Date

2011-08-24

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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