SMTL ID : 6fq7.1

Crystal structure of ERK2 in complex with an adenosine derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Y.191, R.195, R.198, Y.237 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.191 Water bridges: A:Y.191, A:R.195, A:R.195, A:Y.237 Salt bridges: A:R.195, A:R.198 SO4.2: 3 residues within 4Å: Chain A: R.19, S.33, Y.34 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.34 Salt bridges: A:R.19

1 x E2K: 4-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(azidomethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]sulfanylbutanoic acid(Non-covalent)

E2K.3: 19 residues within 4Å: Chain A: I.35, G.36, E.37, G.38, A.39, Y.40, V.43, A.56, K.58, Q.109, D.110, L.111, M.112, D.115, K.118, S.157, N.158, L.160, C.170 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.37, A:A.39, A:D.110, A:M.112, A:K.118 Water bridges: A:G.38, A:Y.40 Salt bridges: A:K.58

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 3 residues within 4Å: Chain A: D.128, H.129, Y.320 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:D.128 pi-Cation interactions: A:H.129 DMS.5: 4 residues within 4Å: Chain A: H.303, K.304, R.305, Q.310 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.310 DMS.6: 3 residues within 4Å: Chain A: T.194, R.195, W.196 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.196 pi-Cation interactions: A:W.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gelin, M. et al., None. To be published

Release Date

2019-03-13

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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