SMTL ID : 6fn5.1

Crystal structure of ERK2 in complex with an adenosine derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x DVZ: [(2~{R},3~{S},4~{R},5~{R})-5-[6-azanyl-8-(2-hydroxy-2-oxoethylsulfanyl)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylimino-azanylidene-azanium(Non-covalent)

DVZ.1: 13 residues within 4Å: Chain A: I.35, G.36, E.37, V.43, A.56, K.58, Q.109, D.110, M.112, D.115, K.118, L.160, C.170 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.110, A:M.112, A:D.115, A:K.118 Water bridges: A:Q.109 Salt bridges: A:K.58

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain A: T.122, N.228, R.229 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.229 DMS.3: 4 residues within 4Å: Chain A: H.303, K.304, R.305, Q.310 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.310

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: Y.191, R.195, R.198, H.236, Y.237 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.195, A:Y.237, A:Y.237 Salt bridges: A:R.195, A:R.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gelin, M. et al., None. To be published

Release Date

2019-03-13

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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