SMTL ID : 6fj0.1

Crystal structure of ERK2 in complex with an adenosine derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

monomer

Ligands

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 2 residues within 4Å: Chain A: K.155, S.157 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.157 pi-Cation interactions: A:Y.117 DMS.2: 3 residues within 4Å: Chain A: D.128, H.129, Y.320 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:D.128 pi-Cation interactions: A:H.129 DMS.3: 4 residues within 4Å: Chain A: H.303, K.304, R.305, Q.310 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.310 DMS.4: 5 residues within 4Å: Chain A: G.38, A.39, Y.40, G.41 Ligands: A3N.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.39, A:Y.40 pi-Cation interactions: A:Y.40

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: R.195, R.198, Y.237 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.198, A:Y.237, A:Y.237 Salt bridges: A:R.195, A:R.198

1 x A3N: 5'-deoxy-5'-(prop-2-yn-1-ylamino)adenosine(Non-covalent)

A3N.6: 13 residues within 4Å: Chain A: I.35, G.36, E.37, V.43, A.56, Q.109, D.110, L.111, M.112, D.115, K.118, L.160 Ligands: DMS.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.110, A:M.112, A:D.115, A:K.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gelin, M. et al., Crystal structure of ERK2 in complex with an adenosine derivative. To be published

Release Date

2019-01-30

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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