SMTL ID : 6fxv.1

Crystal structure of ERK2 in complex with an adenosine derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 3 residues within 4Å: Chain A: D.128, H.129, Y.320 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:H.129 DMS.2: 4 residues within 4Å: Chain A: H.303, K.304, R.305, Q.310 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.310 DMS.3: 3 residues within 4Å: Chain A: T.122, H.124, N.228 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: E.190, Y.191, R.195, R.198, Y.237 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.190 Water bridges: A:R.195, A:R.198, A:Y.237, A:Y.237 Salt bridges: A:R.195, A:R.198

1 x E9W: azanylidene-[[(2~{R},3~{S},4~{R},5~{R})-5-[6-azanyl-8-[2-oxidanylidene-2-(prop-2-ynylamino)ethyl]sulfanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylimino]azanium(Non-covalent)

E9W.5: 16 residues within 4Å: Chain A: I.35, E.37, G.38, V.43, A.56, I.57, K.58, I.107, Q.109, D.110, L.111, M.112, D.115, K.118, L.160, C.170 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:K.58, A:Q.109 Hydrogen bonds: A:K.58, A:Q.109, A:D.110, A:M.112, A:K.118 Water bridges: A:Q.109, A:Q.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gelin, M. et al., None. To be published

Release Date

2019-03-20

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

Related Entries With Identical Sequence