SMTL ID : 6flv.1

Crystal structure of ERK2 in complex with an adenosine derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: Y.191, R.195, R.198, H.236, Y.237 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.195, A:R.198, A:R.198, A:Y.237 Salt bridges: A:R.195, A:R.198 SO4.2: 3 residues within 4Å: Chain A: R.71, R.74, R.176 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.152 Salt bridges: A:R.71, A:R.74, A:R.176

1 x DTW: [(2~{R},3~{S},4~{R},5~{R})-5-[6-azanyl-8-(4-diazanyl-4-oxidanylidene-butyl)sulfanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylimino-azanylidene-azanium(Non-covalent)

DTW.3: 13 residues within 4Å: Chain A: G.36, E.37, V.43, A.56, D.110, L.111, M.112, D.115, K.118, S.157, N.158, L.160, C.170 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.37, A:D.110, A:M.112, A:D.115, A:K.118

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 5 residues within 4Å: Chain A: K.142, H.145, S.146, K.211, E.309 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.211 Salt bridges: A:E.309 DMS.5: 3 residues within 4Å: Chain A: T.194, R.195, W.196 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.196 pi-Cation interactions: A:W.196, A:W.196 DMS.6: 5 residues within 4Å: Chain A: R.81, R.83, Y.143, A.329, E.330 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.330 Water bridges: A:A.331 Salt bridges: A:E.330 DMS.7: 5 residues within 4Å: Chain A: H.303, K.304, R.305, E.307, Q.310 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gelin, M. et al., None. To be published

Release Date

2019-02-06

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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