SMTL ID : 6frp.1

Crystal structure of ERK2 in complex with an adenosine derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 2 residues within 4Å: Chain A: H.124, N.228 No protein-ligand interaction detected (PLIP) DMS.2: 2 residues within 4Å: Chain A: F.63, K.348 No protein-ligand interaction detected (PLIP) DMS.3: 4 residues within 4Å: Chain A: D.128, H.129, Y.132, Y.320 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:D.128 pi-Cation interactions: A:H.129 DMS.4: 2 residues within 4Å: Chain A: K.155, S.157 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.157 pi-Cation interactions: A:Y.117

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: Y.191, R.195, R.198, Y.237 4 PLIP interactions: 4 interactions with chain A Water bridges: A:Y.237, A:Y.237 Salt bridges: A:R.195, A:R.198 SO4.6: 4 residues within 4Å: Chain A: H.303, K.304, R.305, Q.310 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.303, A:Q.310, A:Q.310

1 x ZAS: 5'-azido-5'-deoxyadenosine(Non-covalent)

ZAS.7: 14 residues within 4Å: Chain A: I.35, G.36, E.37, G.38, V.43, A.56, K.58, Q.109, D.110, L.111, M.112, D.115, K.118, L.160 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.110, A:M.112, A:D.115, A:K.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gelin, M. et al., None. To be published

Release Date

2019-03-13

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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