SMTL ID : 3uhm.1

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase in complex with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.26 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.78, T.190, H.237, D.241 Ligands: RFN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.78, A:H.237, A:D.241, A:D.241

1 x RFN: (2R)-N-hydroxy-2-methyl-2-(methylsulfonyl)-4-(2-oxo-4-phenylpyridin-1(2H)-yl)butanamide(Non-covalent)

RFN.2: 19 residues within 4Å: Chain A: L.18, H.19, M.62, E.77, H.78, T.190, F.191, G.192, L.200, A.206, G.209, S.210, V.216, H.237, K.238, D.241, H.264 Ligands: ZN.1, EDO.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.200, A:A.206, A:V.216 Hydrogen bonds: A:M.62, A:T.190

1 x GAI: GUANIDINE(Non-covalent)

GAI.3: 3 residues within 4Å: Chain A: I.197, L.205, A.206 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.205, A:A.206

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: M.62, F.191, G.192, F.193, D.196 Ligands: RFN.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.193, A:F.193, A:D.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montgomery, J.I. et al., Pyridone methylsulfone hydroxamate LpxC inhibitors for the treatment of serious gram-negative infections. J.Med.Chem. (2012)

Release Date

2012-02-01

Peptides

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

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