SMTL ID : 3wmh.1

Human PPAR gamma ligand binding domain in complex with a gammma selective synthetic partial agonist MEKT75

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x JJA: N-(phenylsulfonyl)-4-propoxy-3-({[4-(pyrimidin-2-yl)benzoyl]amino}methyl)benzamide(Non-covalent)

JJA.1: 22 residues within 4Å: Chain A: L.65, E.69, F.74, H.76, R.90, I.91, F.92, G.94, C.95, R.98, S.99, I.136, Y.137, L.140, L.143, I.151, M.158, L.166, F.173, M.174, K.177, H.259 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.91, A:F.92, A:I.136, A:Y.137, A:L.140, A:L.143, A:I.151, A:L.166, A:F.173, A:M.174 Hydrogen bonds: A:S.99, A:Y.137, A:K.177 pi-Stacking: A:F.74 JJA.2: 21 residues within 4Å: Chain B: L.65, F.74, H.76, R.90, I.91, F.92, G.94, C.95, R.98, S.99, I.136, Y.137, L.140, L.143, I.151, M.158, L.163, F.173, M.174, K.177, H.259 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:H.76, B:I.91, B:F.92, B:I.136, B:L.140, B:L.143, B:I.151, B:L.163, B:F.173 Hydrogen bonds: B:H.259 pi-Stacking: B:F.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oyama, T. et al., Human PPRR gamma ligand binding domain in complex with a gammma selective synthetic partial agonist MEKT75. TO BE PUBLISHED

Release Date

2014-11-19

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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