SMTL ID : 3zw9.2 (1 other biounit)

CRYSTAL STRUCTURE OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 1 (RPMFE1) COMPLEXED WITH (2S,3S)-3-HYDROXY-2-METHYLBUTANOYL-COA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 24 residues within 4Å: Chain A: L.322, G.323, G.325, T.326, M.327, V.345, E.346, S.347, D.348, Q.351, T.388, A.400, V.401, F.402, E.403, L.407, K.408, V.411, N.428, T.429, S.430, H.451, F.452, S.454 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.325, A:T.326, A:M.327, A:S.347, A:Q.351, A:V.401, A:E.403, A:K.408, A:N.428, A:S.430, A:S.454 Water bridges: A:G.328

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: M.459, R.460, H.671 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.460, A:H.671 Salt bridges: A:R.460, A:H.671 SO4.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x T1G: (2S,3S)-3-HYDROXY-2-METHYLBUTANOYL-COA(Non-covalent)

T1G.3: 25 residues within 4Å: Chain A: P.40, V.41, A.43, A.79, G.80, A.81, D.82, I.83, F.86, L.118, G.119, G.120, E.123, R.138, P.142, E.143, L.146, I.148, L.149, P.150, G.151, A.152, Y.176, F.291, K.295 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:A.81, A:F.86, A:L.118, A:E.143, A:I.148, A:Y.176 Hydrogen bonds: A:A.81, A:A.81, A:I.83, A:G.120, A:E.123, A:E.143, A:G.151, A:A.152, A:Y.176 Salt bridges: A:K.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kasaragod, P. et al., The Isomerase and Hydratase Reaction Mechanism of the Crotonase Active Site of the Multifunctional Enzyme (Type-1), as Deduced from Structures of Complexes with 3S-Hydroxy- Acyl-Coa. FEBS J. (2013)

Release Date

2012-08-08

Peptides

PEROXISOMAL BIFUNCTIONAL ENZYME: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

PEROXISOMAL BIFUNCTIONAL ENZYME

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