SMTL ID : 5mgb.1 (1 other biounit)

Crystal Structure of Rat Peroxisomal Multifunctional enzyme Type-1 (RPMFE1) Complexed with Acetoacetyl-CoA and NAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: P.211, I.212, E.213, R.216 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.212, A:E.213 Salt bridges: A:R.216 SO4.2: 2 residues within 4Å: Chain A: S.281, G.282 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.282 Water bridges: A:Q.283 SO4.3: 2 residues within 4Å: Chain A: K.299, R.661 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.299, A:R.661

1 x CAA: ACETOACETYL-COENZYME A(Non-covalent)

CAA.4: 20 residues within 4Å: Chain A: P.40, V.41, A.79, G.80, A.81, D.82, I.83, F.86, V.116, L.118, G.119, G.120, E.123, R.138, P.142, E.143, L.146, I.148, Y.176, K.295 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:A.79, A:A.81, A:I.83, A:V.116, A:L.118, A:E.143, A:I.148 Hydrogen bonds: A:A.79, A:A.81, A:A.81, A:I.83, A:G.120, A:G.151, A:Y.176 Salt bridges: A:K.295

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.5: 21 residues within 4Å: Chain A: L.322, G.323, G.325, T.326, M.327, E.346, S.347, Q.351, A.400, V.401, F.402, E.403, L.407, K.408, V.411, N.428, T.429, S.430, H.451, F.452, S.454 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:T.326, A:T.326, A:T.326, A:M.327, A:G.328, A:S.347, A:Q.351, A:V.401, A:E.403, A:E.403, A:K.408, A:N.428, A:S.430, A:S.454

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: K.285, F.684, A.687, S.688, P.727, L.728 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.285, A:F.684, A:L.728 GOL.7: 4 residues within 4Å: Chain A: P.568, V.569, R.570, H.626 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.569, A:R.570

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kasaragod, P. et al., Structural enzymology comparisons of multifunctional enzyme, type-1 (MFE1): the flexibility of its dehydrogenase part. FEBS Open Bio (2017)

Release Date

2016-12-21

Peptides

Peroxisomal bifunctional enzyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisomal bifunctional enzyme

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